Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B23
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   8e-17
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.80 
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   4.3  
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)                  28   4.3  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               27   7.5  
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 8e-17
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 357 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 506
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 207 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 326
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +3

Query: 363  GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 527
            G  G+P G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 42  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 221
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 222 IC 227
           +C
Sbjct: 500 MC 501


>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
          Length = 355

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 460 MTCAFQRSLERTDIMGCPIRTRATVPWGFPN 368
           M C+ + SL   D  GC  +TR+ VP G+P+
Sbjct: 36  MPCSRRSSLSTLD-RGCSDKTRSPVPQGYPD 65


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -2

Query: 234  CC--NRYGLLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG--QAHPDKTEI* 67
            CC  N  G L + ++ A    +  S   + SH    + C  R Y S+G  Q+H D   + 
Sbjct: 1017 CCRVNSVGRLQSHEDGATVCCRVYSVGRLQSHEDGATVC-CRVY-SVGRLQSHEDGATVC 1074

Query: 66   DTVYSYNIDNISLVGAPLC 10
              VYS N   + +V + +C
Sbjct: 1075 WRVYSVNFSRMKMVRSSVC 1093


>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 408 GQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 530
           G  + +VR +DR K ++++AL      +P    + V+ K+G
Sbjct: 516 GGGVNTVRLTDRTKTEMLKALWDVSVSYPKGHAVLVAYKYG 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,860,188
Number of Sequences: 59808
Number of extensions: 430928
Number of successful extensions: 1237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)