Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B23
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 289 6e-79
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 288 1e-78
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 288 2e-78
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 1.5
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 2.0
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 2.0
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 2.0
At5g47870.1 68418.m05914 expressed protein 29 2.7
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 29 2.7
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 2.7
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 3.5
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.5
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 3.5
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.6
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 6.1
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 8.1
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 8.1
At3g19300.1 68416.m02448 protein kinase family protein contains ... 27 8.1
At1g53180.1 68414.m06027 expressed protein 27 8.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 289 bits (710), Expect = 6e-79
Identities = 132/176 (75%), Positives = 147/176 (83%)
Frame = +3
Query: 15 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 375 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 542
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 176
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 288 bits (707), Expect = 1e-78
Identities = 132/176 (75%), Positives = 147/176 (83%)
Frame = +3
Query: 15 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 375 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 542
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 176
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 288 bits (706), Expect = 2e-78
Identities = 132/176 (75%), Positives = 147/176 (83%)
Frame = +3
Query: 15 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 374
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 375 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 542
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 176
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 425 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 312
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 288 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 145
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 288 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 145
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 288 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 145
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 276 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 455
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 456 VIEALRRAKFKFP 494
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 488 LELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 321
L+ S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 123 LQSSVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 198 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 329
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 195 SSEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINK 317
S E++ G C C+ ++ K CG+ I HP H + +N+
Sbjct: 369 SLESVTDGFYCKSCDIFIHKKCGESSGIIDHSSHPDHTLELNR 411
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 174 SDEYEQLSSEALEAGRICCNKYLV 245
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 138 SLSFCPSRKYGSLGQAH 88
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 362 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 222
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 222 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 311
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 126 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 299
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 228 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 323
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 297 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 413
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 485 ELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALG 378
+L T L ++C+ T++ G+ T +C LG
Sbjct: 76 DLGVTSDLTEICITTISRTMELYGIPRNATIFCGLG 111
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 24 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 128
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,159
Number of Sequences: 28952
Number of extensions: 280545
Number of successful extensions: 711
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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