Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B21
         (82 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   1.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    24   3.1  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 80  PSPTNFRSFGNVRRHDYKVSGEKNP 6
           PS   +R FG+ +   YK SG   P
Sbjct: 391 PSSGGYRMFGHSKPSSYKASGPVRP 415


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 59  SFGNVRRHDYKVSGEKNP 6
           S+GN+ R  ++++G +NP
Sbjct: 673 SYGNMSRPSFELNGSRNP 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,397
Number of Sequences: 5004
Number of extensions: 3010
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 8
effective length of database: 2,322,446
effective search space used: 41804028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)