Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B21
         (82 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54235-2|CAA90972.2|  371|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>Z54235-2|CAA90972.2|  371|Caenorhabditis elegans Hypothetical
           protein C09G9.2 protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   HEGSFLRSLCNHGDEHFQKNENSSVM 79
           H GS  R +C HG+     + N S++
Sbjct: 127 HSGSASRKICRHGNSILSASSNGSLV 152


>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  SAHFVIMATNISKRTK 65
           + HFVI ATN+  +TK
Sbjct: 146 NTHFVIFATNVKTKTK 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,036
Number of Sequences: 27780
Number of extensions: 17201
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 12,740,198
effective HSP length: 8
effective length of database: 12,517,958
effective search space used: 225323244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)