Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B21
         (82 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   1.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   1.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   7.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 56  FGNVRRHDYKVSGEKNP 6
           F N R    K SG+KNP
Sbjct: 68  FQNKRAKIKKASGQKNP 84


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 56  FGNVRRHDYKVSGEKNP 6
           F N R    K SG+KNP
Sbjct: 68  FQNKRAKIKKASGQKNP 84


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 2   HEGSFLRSLCNH 37
           HE  F+ SL NH
Sbjct: 787 HESGFMESLDNH 798


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 75  TDEFSFFWKCSSP 37
           TD+  F WK   P
Sbjct: 185 TDDLVFLWKEGDP 197


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 75  TDEFSFFWKCSSP 37
           TD+  F WK   P
Sbjct: 185 TDDLVFLWKEGDP 197


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 38  HDYKVSGEKNPR 3
           H+Y + GE +PR
Sbjct: 728 HNYIMRGEASPR 739


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,313
Number of Sequences: 438
Number of extensions: 202
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 8
effective length of database: 142,839
effective search space used:  2571102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)