Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B20
         (425 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8RGU7 Cluster: Tetratricopeptide repeat family protein...    36   0.35 
UniRef50_Q02CL8 Cluster: Nitrite reductase (NAD(P)H), large subu...    33   3.3  
UniRef50_Q4HK11 Cluster: L-seryl-tRNA selenium transferase; n=3;...    32   4.3  
UniRef50_Q8TA18 Cluster: S48/45; n=29; Plasmodium|Rep: S48/45 - ...    27   4.9  
UniRef50_Q2RML9 Cluster: Hemolysin-type calcium-binding region; ...    32   5.7  
UniRef50_Q54FV3 Cluster: Putative uncharacterized protein; n=1; ...    32   5.7  
UniRef50_A7TSV6 Cluster: Putative uncharacterized protein; n=1; ...    32   5.7  

>UniRef50_Q8RGU7 Cluster: Tetratricopeptide repeat family protein;
           n=2; Fusobacterium nucleatum|Rep: Tetratricopeptide
           repeat family protein - Fusobacterium nucleatum subsp.
           nucleatum
          Length = 158

 Score = 35.9 bits (79), Expect = 0.35
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 79  VIRLIISYCFVVNRRKQLYKTRTSF*NSNYKIIL-KIERS 195
           ++RL++   F++ +++++YKT  S  N NYK +  KI+RS
Sbjct: 119 ILRLMVDILFILEKKEEMYKTINSLKNKNYKNVKDKIKRS 158


>UniRef50_Q02CL8 Cluster: Nitrite reductase (NAD(P)H), large
           subunit; n=1; Solibacter usitatus Ellin6076|Rep: Nitrite
           reductase (NAD(P)H), large subunit - Solibacter usitatus
           (strain Ellin6076)
          Length = 801

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 279 YRHDFRSKFVG*RTHTGHNRIRLRSIYETDSS 374
           YRH+F+   +G  TH  +NRI L S+   + S
Sbjct: 23  YRHEFQITIIGDETHVNYNRILLSSVLAGEKS 54


>UniRef50_Q4HK11 Cluster: L-seryl-tRNA selenium transferase; n=3;
           Campylobacter|Rep: L-seryl-tRNA selenium transferase -
           Campylobacter lari RM2100
          Length = 443

 Score = 32.3 bits (70), Expect = 4.3
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +1

Query: 157 NSNYKIILKIERSRFCFYGS*FIESRINSNTFTKCEHIFDYIDMTS 294
           N N K+ILK  RS F F G     S    +T TK + I  Y D+ S
Sbjct: 207 NENTKMILKTHRSNFAFKGFFEEVSLSEIHTLTKKKKIISYYDLGS 252


>UniRef50_Q8TA18 Cluster: S48/45; n=29; Plasmodium|Rep: S48/45 -
           Plasmodium falciparum
          Length = 448

 Score = 27.5 bits (58), Expect(2) = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 151 F*NSNYKIILKIERSRFCFYGS*FIESRINSNTFT 255
           F N+NYKI+LK +  +   +G  F  +  + +TFT
Sbjct: 277 FKNNNYKIVLKPKYEKKVIHGCNFSSNVSSKHTFT 311



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = +1

Query: 13  NRSRAIHNYFYYNRNR*TKSIIVIRLIISYCFVVNRRKQLYKTRTSF*NSNYKI 174
           N S  + N      N     ++   LI   CF   + K LYK+     + N  I
Sbjct: 204 NESNFVSNVLEVELNDGELFVLACELINKKCFQEGKEKALYKSNKIIYHKNLTI 257


>UniRef50_Q2RML9 Cluster: Hemolysin-type calcium-binding region;
           n=1; Rhodospirillum rubrum ATCC 11170|Rep:
           Hemolysin-type calcium-binding region - Rhodospirillum
           rubrum (strain ATCC 11170 / NCIB 8255)
          Length = 462

 Score = 31.9 bits (69), Expect = 5.7
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
 Frame = +1

Query: 1   ARGNNRSRAIHNYFYYNRNR*TKSIIVIRLIISYCFVVNRRKQLYKTRTSF*N------S 162
           A G N +R     +Y N+N    S++    I +Y   V+      ++ T+F +      +
Sbjct: 43  AEGRNPNRFFDTAYYLNQNPDVASVVKTGSITAYSHFVDNGNVELRSPTAFFDVDWYLTN 102

Query: 163 NYKIILKIERSRFCFYGS*FIESRINSNTFTKCEHIFDYIDMTSDQSSSDKEH 321
           N  + +K+ R     YG  F          T      DY+    D +SS   H
Sbjct: 103 NNDVAVKVYRGELTAYGHFFANGADELRQATPFFSPLDYMAANPDVTSSPLRH 155


>UniRef50_Q54FV3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 917

 Score = 31.9 bits (69), Expect = 5.7
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
 Frame = +1

Query: 79  VIR-LIISYCFVVNRRKQLYKTRTS---F*NSNYKIILK--IERSRFCFYGS*FIESRIN 240
           VIR  ++ +CF     K  Y    S     ++ Y  ILK  ++R+ +  +G+ +I+S  N
Sbjct: 16  VIRGYLLKFCFDCKYNKFKYNQVISVEWLIDNGYINILKEKVKRNEYLVFGNTYIQSNNN 75

Query: 241 SNTFTKCEHIFDYIDMTSDQSSSDKEHTPATTEY--DYEAYTK 363
                     +DY   +S  SSS    TP TT    D EA+ K
Sbjct: 76  G-----IGGYYDYNSSSSSSSSSSSSTTPTTTTLTNDEEAFIK 113


>UniRef50_A7TSV6 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 655

 Score = 31.9 bits (69), Expect = 5.7
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 235 INSNTFTKCEHIFDYIDMTSDQSSSDKEHTPATTEYDYEAYTKPTVAIVDRNEPDNAEIV 414
           I  N  +  + +    D+ ++ S +DK+ T +T E+    YT+    I DRN+   AE++
Sbjct: 566 ITQNQLSDKQSVISSEDIITE-SETDKQITSSTEEF--HKYTEQETDITDRNQDVTAEVL 622

Query: 415 NND 423
            +D
Sbjct: 623 EHD 625


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,491,368
Number of Sequences: 1657284
Number of extensions: 7689703
Number of successful extensions: 18724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18711
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)