Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B20
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   3.7  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   4.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   4.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.9  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   6.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   6.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.5  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 289 TSDQSSSDKEHTPATTEYDYEAYTKPTVAIVDR 387
           T+   S ++  T   T+ DYE +T+P     DR
Sbjct: 600 TAGAESINENDTVFLTDPDYETFTRPDALYFDR 632


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -3

Query: 288 HVYIIKNMFTFGECIRI 238
           H+Y+ K++ T+GEC+R+
Sbjct: 7   HLYVKKDL-TYGECVRV 22


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 413 TISA-LSGSFRSTIATVGFVYAS*SYSVVAGVCSLSDEL*SEVMSI*SKICSHLVN 249
           T+SA LSG+++ ++  + ++ +S         C+LS  + S ++S   +IC H+ N
Sbjct: 151 TLSAFLSGNYKESLEQIQYLISS---------CNLSPLVVSRLISFLPRICEHIEN 197


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 73   IIVIRLIISYCFVVNRRKQLYK 138
            I+ + + +S CF +N+R Q YK
Sbjct: 2330 IVQLNIFLSRCFDLNQRCQFYK 2351


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 331 TTEYDYEAYTKPTVAIVDRNEPDNAEIVNND 423
           T +Y Y + T+P V+ +    P+   + N D
Sbjct: 285 TAQYPYASATEPGVSNIPETRPERPVVYNMD 315


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 201  LFLRIIIY*VTDKFEYIHQM*TYF-*LYRHDFR 296
            +F+ + I  V D F YIH   + F  L R+DFR
Sbjct: 1496 IFVNMFITVVFDNFSYIHTKSSSFTNLQRNDFR 1528


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 259 CEHIFDYIDMTSDQSSSDKEH 321
           CE  F + D+T D +  D +H
Sbjct: 504 CEKFFSFADVTDDPTLKDPKH 524


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 298 QSSSDKEHTPATTEYDYEAYTKPTVAIVD 384
           + SSD EHT A+ E D   Y      IV+
Sbjct: 714 KGSSDDEHTIASVEQDVYPYKTSLPTIVE 742


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 134 YNCLRRFTTKQ*LIINLMTIIDFVYRF 54
           YN L R++ ++ ++ +LM  +DF+  F
Sbjct: 224 YNILHRYSPEEFIMSSLMLYLDFINLF 250


>SPBC19F5.03 |||inositol polyphosphate phosphatase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 61 IDFDCNRNNYELHATDCCL 5
          + F+ N   ++L   DCCL
Sbjct: 2  VQFEANEKQFKLRREDCCL 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,800
Number of Sequences: 5004
Number of extensions: 35389
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)