Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B20
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680     29   2.1  
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    27   6.3  
04_01_0063 - 630345-633743                                             27   6.3  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    27   8.3  

>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
          Length = 628

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 295 DQSSSDKEHTPAT--TEYDYEAYTKPTVAIVDRNEPDNAEI 411
           D  SS ++  P T   E D    T  T  +  RNEPD+A++
Sbjct: 516 DSKSSTRQTGPVTEQNEPDSAKMTMQTEPVAQRNEPDSAKV 556


>12_02_1283 -
           27532143-27532517,27532602-27532906,27533053-27533311,
           27534412-27534618,27534726-27535181,27535866-27535963,
           27536657-27536785,27537371-27537605,27538932-27539039,
           27539110-27539160,27539261-27539445,27540207-27540274,
           27541535-27541600,27541678-27541730,27542536-27542653,
           27542743-27542844,27543525-27543682,27543763-27543840,
           27543978-27544069,27544308-27544458
          Length = 1097

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 36  LFLLQSKSINKIDYCH 83
           LF L+S +IN+IDYC+
Sbjct: 865 LFGLESSAINRIDYCY 880


>04_01_0063 - 630345-633743
          Length = 1132

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 76  IVIRLIISYCFVVN 117
           +V RLIISYCFV N
Sbjct: 908 VVDRLIISYCFVTN 921


>03_05_0124 + 21034963-21035181,21035618-21037466,21037485-21038194,
            21038426-21038470,21038557-21038745
          Length = 1003

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 238  NSNTFTKCEHIFDYIDMTSDQSSSDKEHTPATTEYDYEAYTKPTVAIVDRNEPDNAEIVN 417
            NS  F   + + ++I+    QS  DKE      E+D  +Y +  +  +  N  D+ E+ N
Sbjct: 915  NSLDFPMLQILKEWIEW--QQSLIDKEDKQQP-EFDNASYDQEALGALSDNSEDDVEVFN 971

Query: 418  ND 423
             D
Sbjct: 972  ED 973


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,425,681
Number of Sequences: 37544
Number of extensions: 162735
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)