Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B20
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52756| Best HMM Match : Albicidin_res (HMM E-Value=7.1)             28   3.7  
SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)               27   4.9  
SB_42806| Best HMM Match : MORN (HMM E-Value=0)                        27   6.5  
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   27   8.6  
SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_52756| Best HMM Match : Albicidin_res (HMM E-Value=7.1)
          Length = 246

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 226 ESRINSNTFTKCEHIFDYIDMTSDQSSSDKEHTPATTEY 342
           E ++    F+      +++  T++Q SS  EH P+T E+
Sbjct: 126 EQKVTRRKFSPNPSTPEHVPSTTEQVSSTTEHVPSTAEH 164


>SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)
          Length = 750

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 174 YFIIRILK*RSRFVQLFTTIHNKTITNYQSNDNNRFCL 61
           Y+ +  L  R + V +F  IHN +I+      N+R C+
Sbjct: 712 YWCLYYLLERQKGVYMFDAIHNDSISLNDQGGNHRLCI 749


>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
          Length = 778

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 DMTSDQSSSDKE-HTPATTEYDYEAYTKPTVAIVDRNEP 396
           D  +D+++ D +    AT+E + +  TKP +  + RNEP
Sbjct: 17  DNEADETTGDGDGEKDATSEQNMQEETKPVIQDMMRNEP 55


>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 280 IDMTSDQSSSDK-EHTPATTEYDYEAYTKPTVAIVDRNEP 396
           I +T+D S+S   +HTP T  YD +     +V  + R+ P
Sbjct: 56  IPLTTDVSASSSFDHTPLTPRYDSDVNAIESVESLGRSLP 95


>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 123 TTIHNKTITNYQSNDNNRFCLSISIVIEIIMNCTR 19
           T ++NKT   +   DN  F L  ++++ +I   TR
Sbjct: 616 TFVYNKTYDGFGEGDNRLFVLKATLLVSLIGLYTR 650


>SB_11438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 244 NTFTKCEHIFDYIDMTSDQSSSDKEHTPATTEYD 345
           N+   CEHI+++  +T D+     EH P  T+ D
Sbjct: 168 NSKNTCEHIYEFPTLTPDEMQEMIEH-PFETKSD 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,906
Number of Sequences: 59808
Number of extensions: 239715
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)