Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B20
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta...    29   1.7  
At1g15640.1 68414.m01879 hypothetical protein                          26   9.3  

>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
           domain-containing protein protein YJL162c, Saccharomyces
           cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
           domain;
          Length = 345

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 KCEHIFDYIDMTS-DQSSSDKEHTPATTEYDYEAYTKPTVAIVDRNEPDNAEIVNND 423
           KCE  ++Y+  T  +++ ++KE TP   E   +A  K T       + D++  VN D
Sbjct: 217 KCETQYEYVRATEIEKTPTEKEKTPTEKEETPQATNKNTNGASSSCDRDSSLNVNFD 273


>At1g15640.1 68414.m01879 hypothetical protein
          Length = 255

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 253 TKCEHIFDYIDMTSDQSSSDKEH-TPATTEYD 345
           TK EHI D + +    SSS++EH    TT  D
Sbjct: 7   TKNEHILDDVTIIHGDSSSNEEHIVNITTNVD 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,096
Number of Sequences: 28952
Number of extensions: 156204
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)