Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B19
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 67 4e-13
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 67 4e-13
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 62 9e-12
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 0.52
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 0.91
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 2.8
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 24 3.7
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 24 3.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 23 4.9
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 23 4.9
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 23 8.5
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 23 8.5
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 66.9 bits (156), Expect = 4e-13
Identities = 30/58 (51%), Positives = 44/58 (75%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELL 59
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 66.9 bits (156), Expect = 4e-13
Identities = 30/58 (51%), Positives = 44/58 (75%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELL 59
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 62.5 bits (145), Expect = 9e-12
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 2 SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELL 59
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 0.52
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 203 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 93
+PV L +++F +G +T N D I+ K G+N S
Sbjct: 66 KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 0.91
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 105 SALILVD-DDV--AVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLIT 254
S L+L + DV A++ E+IS IL + +W AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 190 STSTAAAFSMAEIFSPVTATSSSTRI 113
+TST+ ++ I SP + +SSST++
Sbjct: 592 TTSTSVLYTSTPITSPNSTSSSSTQV 617
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 23.8 bits (49), Expect = 3.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 149 ENLSHTESGCCRC*AVLAWSICKGLGGHQCS*FNN 253
+NLS E C AV AW+ G HQ NN
Sbjct: 134 KNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNN 168
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 3.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 244 SRTLMPSKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSS 122
S + S N P +GS+S +A S F ++ +SS
Sbjct: 230 SNSFTGSNPVQNNPSSFGSSSFGSATSGPSAFGGISQPNSS 270
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 23.4 bits (48), Expect = 4.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 42 FWRLARITFKMASKAELACVYSALILVDDDVAVTGEKISAIL 167
FW ++ M S ++ +C Y++ V+D A T K IL
Sbjct: 981 FWNVSDTLKNMFSTSDFSCAYNS---VEDLYAFTSMKSKEIL 1019
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 23.4 bits (48), Expect = 4.9
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 196 TGLVYLQRPWRASMF 240
TG+VY + PWR + +
Sbjct: 79 TGIVYRETPWRKTTY 93
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)
Frame = +1
Query: 7 GSNVLVLPEL--RPFG 48
GSNV+VLPE+ P+G
Sbjct: 75 GSNVIVLPEIFNSPYG 90
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 22.6 bits (46), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 94 LVFTPPLSW*MTMSPLPVRKSQPY*KRLL*MLSRTGLVYLQ 216
L FTP +W + + + + S PY + +L LS + LQ
Sbjct: 117 LKFTPSKAWIIHVDAVVILSSSPY-ENILSALSLAAYLALQ 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,261
Number of Sequences: 5004
Number of extensions: 15007
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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