Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B19
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 71 1e-13
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718... 29 0.52
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 28 1.2
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 27 1.6
07_03_0260 + 15928932-15929255,15930174-15930347 27 2.1
05_03_0090 - 8330283-8330831 27 2.1
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 26 3.6
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435 26 4.8
08_02_0734 - 20559249-20559868,20560812-20562132 25 6.4
07_03_0587 + 19708841-19709282,19709693-19709883,19710429-197105... 25 6.4
03_05_0905 - 28665838-28666422,28667073-28667156,28667335-286674... 25 6.4
02_05_1237 + 35149292-35149442,35149552-35150006 25 6.4
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/58 (56%), Positives = 43/58 (74%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
S +E+AC +ALIL DD + +T EKI+ ++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 2 SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLI 59
>03_02_0295 +
7178921-7179451,7180083-7180448,7181316-7181450,
7181533-7181606,7181960-7181999,7182178-7182223,
7182398-7182477,7182585-7182760,7182848-7182973,
7183338-7183430,7184135-7184260,7184815-7184884,
7185262-7185344,7186216-7186329,7186884-7186983,
7187557-7187583
Length = 728
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 51 LARITFKMASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKAL 224
LAR +K A KA+ C Y AL + D+ +T E+ S +L + E W F L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 202 GQYGSTSTAAAFSMAEIFSPVTATSSS 122
G +G T+ AAA + A++F+P T +S
Sbjct: 942 GDHGHTADAAAAAAADVFTPATMARAS 968
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 66 FKMASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAK 218
FK + A Y +LIL ++ EK++AI A D+E + P L K
Sbjct: 725 FKFQQPHQQASYYCSLIL-EEQKWTWDEKLAAISHTEASDLEKFLPHLLGK 774
>07_03_0260 + 15928932-15929255,15930174-15930347
Length = 165
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 111 GRSKHKLIQLLMPF*MLYVQVAKR 40
GR+ HKL+Q+ +PF +L V A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142
>05_03_0090 - 8330283-8330831
Length = 182
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 130 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 231
+SPL R+S P + + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -2
Query: 163 MAEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRASRQKALAQGEQAR 14
+A + PV ATS+S I+ QA+++ + V+R S+++A++ R
Sbjct: 669 LASLSQPVGATSASASIQGSSAQASTSTTSQSKVVR-SKKRAVSVATSLR 717
>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
Length = 415
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 87 ELACVYSALILVDDDVAVTGEKISAIL---KAAAVDVEPYWPGLFAKALEGI 233
+L V + + +VD + T +++ + KA V+ + PGL AKA GI
Sbjct: 161 KLPVVTAKITMVDLPLGATEDRVCGTIDIEKALTDGVKAFEPGLLAKANRGI 212
>08_02_0734 - 20559249-20559868,20560812-20562132
Length = 646
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 217 FANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANS 86
F R S STAAA + ++ P+T T + T + A Q++S
Sbjct: 281 FRRRATAPRSRSTAAAAAAHDVAEPITVTVARTDMDAAVKQSHS 324
>07_03_0587 +
19708841-19709282,19709693-19709883,19710429-19710568,
19710955-19711380,19711540-19712685,19712805-19712934,
19713257-19713492,19713575-19713710,19713793-19713869,
19714692-19714798,19714896-19714996
Length = 1043
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTG 146
S ++ CV S+ +++DDD+ + G
Sbjct: 544 SLSQCLCVRSSSVIIDDDLVIVG 566
>03_05_0905 -
28665838-28666422,28667073-28667156,28667335-28667410,
28667497-28667600,28668673-28668735,28669312-28669317
Length = 305
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 48 RLARITFKMASKAELACVYSALILVDDDVAVT 143
+LA +TFK + A+ A + S +VD V +T
Sbjct: 64 QLAYVTFKDSQGADTAVLLSGATIVDRSVIIT 95
>02_05_1237 + 35149292-35149442,35149552-35150006
Length = 201
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 48 RLARITFKMASKAELACVYSALILVDDDVAVTGEKISAILKAA 176
RL R+T K +A A DDD A E ++A+++ A
Sbjct: 83 RLHRVTGKKVDLLVIAPPKPAAAADDDDKAAAAEAVAALIRQA 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,044
Number of Sequences: 37544
Number of extensions: 112210
Number of successful extensions: 271
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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