Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B19
         (254 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-20
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.79 
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   27   2.4  
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   3.2  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        27   3.2  
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  26   5.6  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   26   5.6  
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     26   5.6  
SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 42/60 (70%), Positives = 52/60 (86%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS +ELACVYSALIL DDDVA+T +KI  ++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 231 CPPRPLQIDQASTAQHLQQPLSVWLR 154
           CPP+PL +   ST +H  Q    ++R
Sbjct: 412 CPPKPLSLSDTSTLRHNSQTSPTFIR 437


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 33  AKAFWRLARITFKMASKAELACVYSALILVDDDVAVTGEKIS 158
           A+  WR+     K   + +  C     +L DDD+A T   ++
Sbjct: 740 ARKEWRVVSSFVKSLEEGKATCSSGLAVLTDDDLATTSRPLT 781


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 99  VYSALILVDDDVAVTGEKI-SAILKAAAVDVEPYWPGLFAKALE 227
           V +AL  VD   A   + I SA+LK  A ++ P   GLF K+LE
Sbjct: 512 VRAALASVDPRKARGPDNIPSAVLKICANELAPSLCGLFNKSLE 555


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 74   HFKCYTCKSPK-GLSSGRTSTFDP 6
            H KC  C++PK G     TS F P
Sbjct: 1902 HLKCLACETPKPGAKPAETSGFKP 1925


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 99  VYSALILVDDDVAVTGEKI-SAILKAAAVDVEPYWPGLFAKALE 227
           V +AL  VD   A   + I SA+LK  A ++ P   GLF K+LE
Sbjct: 104 VRAALASVDPRKARGPDNIPSAVLKICANELAPSLCGLFNKSLE 147


>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 36  KAFWRLARIT--FKMASKAELACVYSALILV 122
           K F   AR T   +M  KAE+A V+SAL+L+
Sbjct: 167 KRFLVRARFTKLLRMEQKAEMALVFSALLLL 197


>SB_16319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 48  RLARITFKMASKAELACVYSALILVDD 128
           R AR+     S+ E  C +SALI+V D
Sbjct: 45  RRARVRLPCRSRKERYCEFSALIIVHD 71


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 226  SKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDA 74
            SK FA +PG      T     +  + S VTA  +S R     T+  S+ DA
Sbjct: 1602 SKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFA---TKPGSSIDA 1649



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 226  SKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDA 74
            SK FA +PG      T     +  + S VTA  +S R     T+  S+ DA
Sbjct: 1636 SKRFATKPGSSIDAPTGIKDRIKAVSSSVTAPKTSERFA---TKPGSSIDA 1683


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 226 SKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDA 74
           SK FA +PG      T     +  + S VTA  +S R     T+  S+ DA
Sbjct: 473 SKRFATKPGSSIDAPTGNKHRIKAVSSSVTAPKTSKRFA---TKPGSSIDA 520



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 226 SKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDA 74
           SK FA +PG      T     +  + S VTA  +S R     T+  S+ DA
Sbjct: 507 SKRFATKPGSSIDAPTGIKDRIKAVSSSVTAPKTSERFA---TKPGSSIDA 554


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 247 KSRTLMPSKAFANRPGQYGSTSTAAAFSMAEIFSPV 140
           KS   +PSK   N+PG+   T  +A F++     P+
Sbjct: 587 KSAECLPSKGKNNKPGKGKKTDMSAWFNLFSDLDPL 622


>SB_58935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 245 ITNIDALQGLCK*TRPVRL 189
           ITN DAL+ L K +RPVR+
Sbjct: 42  ITNDDALKELSKLSRPVRV 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,258
Number of Sequences: 59808
Number of extensions: 111005
Number of successful extensions: 353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)