Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B19
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    99   2e-22
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    96   3e-21
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    29   0.35 
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =   99 bits (238), Expect = 2e-22
 Identities = 45/61 (73%), Positives = 55/61 (90%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+ +LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 252 T 254
           T
Sbjct: 61  T 61


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 44/61 (72%), Positives = 54/61 (88%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+ +LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 252 T 254
           T
Sbjct: 61  T 61


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 196 YGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAF 80
           +GST+T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 69  KMASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPY 197
           KM  K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 96  CVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINV 239
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNV 316


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 60  ITFKMA-SKAELACVYSALILVDDDVAVTGEKISAILK 170
           IT  M+ S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 259 ITLDMSISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>Z81517-8|CAM84818.1|  357|Caenorhabditis elegans Hypothetical
           protein F28B1.9 protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 89  FSF*CHFKCYTCKSPKGLSSGRTSTFDPR 3
           FS  C    Y+C  P+ LS GRT  F+ R
Sbjct: 145 FSLACVADSYSCDCPRILSDGRTG-FESR 172


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 156 SAILKAAAVDVEPYWPGL 209
           +A L+ AAV V PYW G+
Sbjct: 67  NAYLQLAAVSVTPYWLGI 84


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 175  AAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDAI 71
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 175  AAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDAI 71
            A   M EIFSPV++T+   R  +   +  S +D I
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTI 2828


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 156 SAILKAAAVDVEPYWPGL 209
           +A  K AAV V PYW G+
Sbjct: 77  NAYQKLAAVSVTPYWLGI 94


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 229 PSKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSST 119
           P+K   + P   G++ TA A       +PV  TSS+T
Sbjct: 625 PTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 229 PSKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSST 119
           P+K   + P   G++ TA A       +PV  TSS+T
Sbjct: 681 PTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,301,238
Number of Sequences: 27780
Number of extensions: 85092
Number of successful extensions: 254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)