Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B19
(254 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 71 1e-13
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 71 1e-13
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 71 1e-13
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 70 2e-13
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 70 2e-13
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 70 2e-13
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 36 0.005
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 29 0.56
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 28 0.74
At1g07380.1 68414.m00787 ceramidase family protein contains simi... 28 0.74
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 27 1.3
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 1.7
At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing ... 26 3.0
At3g59760.3 68416.m06669 cysteine synthase, mitochondrial, putat... 26 3.0
At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putat... 26 3.0
At3g59760.1 68416.m06667 cysteine synthase, mitochondrial, putat... 26 3.0
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative... 26 4.0
At3g04140.1 68416.m00438 ankyrin repeat family protein contains ... 26 4.0
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 25 5.2
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 25 5.2
At5g58410.1 68418.m07314 expressed protein contains similarity t... 25 6.9
At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar t... 25 6.9
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/58 (56%), Positives = 41/58 (70%)
Frame = +3
Query: 78 SKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 2 STSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 59
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +3
Query: 72 MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
M++ ELAC Y+ +IL D+ +A+T +KI+ ++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 70.9 bits (166), Expect = 1e-13
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +3
Query: 72 MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
M++ ELAC Y+ +IL D+ +A+T +KI+ ++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3
Query: 72 MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
M++ ELAC Y+ +IL D+ +A+T +KI+ ++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3
Query: 72 MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
M++ ELAC Y+ +IL D+ +A+T +KI+ ++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 69.7 bits (163), Expect = 2e-13
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = +3
Query: 72 MASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
M++ ELAC Y+ +IL D+ +A+T +KI+ ++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 87 ELACVYSALILVDDDVAVTGEKISAILKAAAVDVEPYWPGL 209
ELAC Y+AL+L D VT +S ++K A +++E YWP L
Sbjct: 5 ELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 28.7 bits (61), Expect = 0.56
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 223 KAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTR 116
+ ++N P + S TAA M +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 28.3 bits (60), Expect = 0.74
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 69 KMASKAELACVYSALILVDDDVAVTGEKISAIL---KAAAVDVEPYWPGLFAKALEGI 233
K+ EL+ + + + +VD + T +++ + KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At1g07380.1 68414.m00787 ceramidase family protein contains
similarity to mitochondrial ceramidase [Homo sapiens]
gi|9246993|gb|AAF86240
Length = 779
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 42 FWRLARITFKMASKAELACVYSALILVD 125
FWRL R K K ++ C Y IL+D
Sbjct: 479 FWRLVRNVLKTPDKKQIDCHYPKPILLD 506
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 247 KSRTLMPSKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE 104
K+R + K RP STS+++A + + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 48 RLARITFKMASKAELACVYSALILVDDDVAVTGEKISAILKAAAVDVEP 194
+LA +TFK AE A + S +VD V V+ + A +EP
Sbjct: 43 KLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEP 91
>At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing
protein similar to unknown protein (pir||C71447)
Length = 295
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 48 RLARITFKMASKAELACVYSALILVDDDVAVT 143
+LA +TFK AE A + + +VD V VT
Sbjct: 43 KLAYVTFKDLQGAETAVLLTGSTIVDSSVTVT 74
>At3g59760.3 68416.m06669 cysteine synthase, mitochondrial, putative
/ O-acetylserine (thiol)-lyase, putative /
O-acetylserine sulfhydrylase, putative similar to
SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
4.2.99.8) (O- acetylserine sulfhydrylase)
(O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
Length = 430
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 187 TSTAAAFSMAEIFSPVTATSSSTRIR 110
TS AA S A + +P+T++SSS+ +R
Sbjct: 32 TSMAATSSSALLLNPLTSSSSSSTLR 57
>At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putative
/ O-acetylserine (thiol)-lyase, putative /
O-acetylserine sulfhydrylase, putative similar to
SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
4.2.99.8) (O- acetylserine sulfhydrylase)
(O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
Length = 432
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 187 TSTAAAFSMAEIFSPVTATSSSTRIR 110
TS AA S A + +P+T++SSS+ +R
Sbjct: 32 TSMAATSSSALLLNPLTSSSSSSTLR 57
>At3g59760.1 68416.m06667 cysteine synthase, mitochondrial, putative
/ O-acetylserine (thiol)-lyase, putative /
O-acetylserine sulfhydrylase, putative similar to
SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
4.2.99.8) (O- acetylserine sulfhydrylase)
(O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
Length = 433
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 187 TSTAAAFSMAEIFSPVTATSSSTRIR 110
TS AA S A + +P+T++SSS+ +R
Sbjct: 32 TSMAATSSSALLLNPLTSSSSSSTLR 57
>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
similar to glucose-6-phosphate isomerase [Spinacia
oleracea] GI:3413511; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 613
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 204 GLFAKALEGINVRDLIT 254
GL AL+GINVR+++T
Sbjct: 316 GLLPAALQGINVREMLT 332
>At3g04140.1 68416.m00438 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 656
Score = 25.8 bits (54), Expect = 4.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 226 SKAFANRPGQYGSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDAI 71
S+ R G GS T+ S +EIF A + T AE + +FD I
Sbjct: 418 SRLREERYGFCGSPGTSFEISDSEIFLFTAARTDKTAANAELSPDRESFDGI 469
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 193 GSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRASRQKALAQGE--- 23
G ++ A+ + + PV+AT+SST+ A T +S A + I A Q A AQ +
Sbjct: 80 GGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPA--SPIPAQEQPA-AQTDTYG 136
Query: 22 QARLTLV 2
QA TLV
Sbjct: 137 QAASTLV 143
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 25.4 bits (53), Expect = 5.2
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -2
Query: 193 GSTSTAAAFSMAEIFSPVTATSSSTRIRAE*TQANSAFDAILNVIRASRQKALAQGE--- 23
G ++ A+ + + PV+AT+SST+ A T +S A + I A Q A AQ +
Sbjct: 80 GGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPA--SPIPAQEQPA-AQTDTYG 136
Query: 22 QARLTLV 2
QA TLV
Sbjct: 137 QAASTLV 143
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 9 VKRACSP*AKAFWRLARITFKMASKAELACVYSALILVDDDV 134
V CS FW+ + +S + LA +++L++DD+
Sbjct: 900 VHAVCSKMDNQFWKSINYDVRKSSASTLAQFLRSVVLLEDDL 941
>At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase [Precursor] SP:Q40588 from
[Nicotiana tabacum]
Length = 573
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 102 YSALILVDDDVAVTGEKISAILKAAAVDVEPYW 200
Y A V+D +GE S +LK A+ + YW
Sbjct: 264 YVAPFTVNDIDVYSGETYSVLLKTNALPSKKYW 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,103,877
Number of Sequences: 28952
Number of extensions: 84029
Number of successful extensions: 201
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,070,560
effective HSP length: 63
effective length of database: 10,246,584
effective search space used: 215178264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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