Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B18
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   6.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 296 PPALLGWNI 270
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 407 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 291
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 407 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 291
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 407 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 291
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 315 TSCTTLLWSSTNAANT 362
           T CTT  WS    A T
Sbjct: 199 TCCTTXWWSXXTVAXT 214


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +2

Query: 425 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVSLARLDQSVHLL 565
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFL 290


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 367 TPRWTAQPPVRPSTQTPASA 426
           TP   A PP  PS+  P SA
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +2

Query: 425 LTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVSLARLDQSVHLL 565
           L+ I NH  +L ++ +      L+  QD+ +  +V +A++  ++  L
Sbjct: 244 LSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,533
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)