Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B18
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 106 1e-23
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 99 2e-21
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 95 4e-20
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 93 1e-19
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 91 4e-19
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 89 1e-18
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 84 5e-17
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 75 3e-14
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 56 2e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 54 7e-08
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 54 7e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 54 9e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 53 2e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 52 3e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 52 3e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 51 6e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 8e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 8e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 50 1e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 2e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 4e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 4e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 47 8e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 47 8e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 1e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 1e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 1e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 1e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 1e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 45 3e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 3e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 3e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 44 5e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 7e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 7e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 7e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 9e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 1e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 1e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 1e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 43 1e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 43 2e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 2e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 4e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 5e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 41 5e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 9e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 9e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 40 9e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 40 9e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 9e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 9e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 40 0.001
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 40 0.001
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.003
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.004
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.004
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.005
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 38 0.005
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 38 0.005
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.005
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 38 0.005
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 38 0.005
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 37 0.008
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.011
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.011
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 37 0.011
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.011
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.014
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.014
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 36 0.014
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.014
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.019
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.019
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.025
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.033
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.033
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.044
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.044
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.044
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 35 0.044
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 35 0.044
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.044
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 34 0.058
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 34 0.058
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 34 0.058
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.058
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 34 0.077
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.077
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.077
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 33 0.10
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 33 0.10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 32 0.23
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 32 0.31
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.31
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.31
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 0.41
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.41
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.54
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.54
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.54
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.54
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.54
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.54
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.72
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.72
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.72
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.72
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.72
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 31 0.72
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica... 30 0.95
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 0.95
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 0.95
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 30 0.95
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 30 0.95
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 0.95
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 30 1.2
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.2
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 29 1.7
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 1.7
At5g61100.1 68418.m07666 hypothetical protein 29 2.2
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.2
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 29 2.2
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil... 29 2.9
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 2.9
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 2.9
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 2.9
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 2.9
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 2.9
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 3.8
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 3.8
At4g11590.1 68417.m01857 F-box family protein contains weak hit ... 28 3.8
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 28 3.8
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 5.0
At2g21120.1 68415.m02506 expressed protein 28 5.0
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 27 6.7
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 27 6.7
At1g47660.1 68414.m05295 hypothetical protein 27 6.7
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 27 8.8
At5g62210.1 68418.m07811 embryo-specific protein-related contain... 27 8.8
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 8.8
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 8.8
At3g62780.1 68416.m07053 C2 domain-containing protein contains s... 27 8.8
At3g55690.1 68416.m06187 expressed protein predicted proteins, A... 27 8.8
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 27 8.8
At1g29970.1 68414.m03665 expressed protein similar to GI:3128228... 27 8.8
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 106 bits (254), Expect = 1e-23
Identities = 67/145 (46%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LR+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALA
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 187 QRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPP--AQRFYGPAQMPQI 360
QRKEDRKA L Q GG PP Q FYG P +
Sbjct: 403 QRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGG------PPMGQQLFYGQGP-PAM 455
Query: 361 RPTPRWTAQPPVRPSTQTPASAYAN 435
P P + Q + P + S N
Sbjct: 456 IPQPGFGYQQQLVPGMRPGGSPMPN 480
Score = 60.5 bits (140), Expect = 8e-10
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L K F FG TS +M + +G+SKGFGFV F + ++A +AV +NG+ K +V A
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 187 QRKEDRKAHL 216
Q+K +R+ L
Sbjct: 300 QKKSERETEL 309
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
+ L + F+ FG I S KV ++ G+SKG+GFV + + E A A+ ++NG ++ K +YV
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F G + S +V + RS G+G+V +++P++A++A+ E+N + + + V
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY 120
Query: 184 AQR 192
+ R
Sbjct: 121 SVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/70 (61%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 187 QRKEDRKAHL 216
QRKEDR+AHL
Sbjct: 408 QRKEDRRAHL 417
Score = 61.3 bits (142), Expect = 4e-10
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LRK F FG I+SA VM + G S+ FGFV F E A AV +MNG +G LYV A
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Query: 187 QRKEDRKAHL 216
Q+K +R+ L
Sbjct: 305 QKKSEREEEL 314
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
+ L + F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V
Sbjct: 150 KALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
Query: 181 LAQRKEDR 204
R+++R
Sbjct: 210 HFIRRQER 217
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 94.7 bits (225), Expect = 4e-20
Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L++ F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+A
Sbjct: 148 LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
Query: 187 QRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPA------QRFYGPAQ 348
QRKEDR+ L QPS G +P PP Q FYG A
Sbjct: 208 QRKEDRRVRLQAQFSQVRPVA--------MQPSV--GPRMPVYPPGGPGIGQQMFYGQAP 257
Query: 349 MPQIRPTPRWTAQPPVRP 402
I P P + Q + P
Sbjct: 258 PAMIPPQPGYGYQQQLVP 275
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L+ F +G ITSA VM + +G+SKGFGFV F + ++A +AV +NG K YV A
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Query: 187 QRKEDRKAHL 216
Q+K +R+ L
Sbjct: 105 QKKSERETEL 114
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/70 (60%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 187 QRKEDRKAHL 216
QRKE+R+AHL
Sbjct: 404 QRKEERQAHL 413
Score = 64.9 bits (151), Expect = 4e-11
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L+K F +G I+SA VM + G S+ FGFV F SPE A AV +MNG +G LYV A
Sbjct: 241 LKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300
Query: 187 QRKEDRKAHL 216
Q+K DR+ L
Sbjct: 301 QKKSDREEEL 310
Score = 57.2 bits (132), Expect = 7e-09
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
+ L + F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V
Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 205
Query: 181 LAQRKEDR 204
R++DR
Sbjct: 206 HFVRRQDR 213
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 91.5 bits (217), Expect = 4e-19
Identities = 59/132 (44%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LR+ FA FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG KPLYVALA
Sbjct: 344 LRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 187 QRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPAQRFYGPAQMPQIRP 366
QRKE+R+A L + P GG P + Q FYG P I
Sbjct: 404 QRKEERRAKLQAQFSQMRPAFIPGVGPRM--PIFTGG--APGL-GQQIFYGQGPPPIIPH 458
Query: 367 TPRWTAQPPVRP 402
P + QP + P
Sbjct: 459 QPGFGYQPQLVP 470
Score = 62.9 bits (146), Expect = 1e-10
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+ K YV A
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 187 QRKEDRKAHLT 219
Q+K +R+ L+
Sbjct: 301 QKKSERELELS 311
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L + F+ GTI S KV + G+S+G+GFV F + + A A+ ++NG+++ K ++V
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPF 209
Query: 187 QRKEDRKA 210
RKE+R++
Sbjct: 210 LRKEERES 217
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 89.4 bits (212), Expect = 1e-18
Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LRK F+ GTITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 187 QRKEDRKAHL 216
Q+KEDRK L
Sbjct: 380 QKKEDRKMQL 389
Score = 57.6 bits (133), Expect = 5e-09
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LR++FA FG I S + ++ R +G+ FV F +PE+A +A +NG G+K LYV A
Sbjct: 217 LREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Query: 187 QRKEDRK 207
Q+K +R+
Sbjct: 277 QKKAERE 283
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L+ F FG I S KV LEDG+S+G+GFV F + A A+ +N IV K +YV
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 187 QRKEDR 204
+K DR
Sbjct: 188 MKKTDR 193
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
FA F ++TS ++ + GRS +G+ F S ++A A+ + N ++ K + V + R
Sbjct: 44 FAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRA 103
Query: 196 EDRK 207
D +
Sbjct: 104 PDAR 107
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 84.2 bits (199), Expect = 5e-17
Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L + F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+LA
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 187 QRKEDRKAHL 216
Q KE K HL
Sbjct: 299 QCKEQHKLHL 308
Score = 61.3 bits (142), Expect = 4e-10
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +MNG +V K L+V A
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 187 QRKEDRKAHL 216
QRK +R L
Sbjct: 195 QRKTNRTEDL 204
Score = 33.9 bits (74), Expect = 0.077
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
F+ FG + S KV + G SKG+GFV F S A NG ++ + ++V
Sbjct: 51 FSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 74.9 bits (176), Expect = 3e-14
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LR+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +A
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 187 QRKEDR 204
+RKEDR
Sbjct: 380 ERKEDR 385
Score = 60.9 bits (141), Expect = 6e-10
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L + F PFG+I S KV+ E+G+SKGFGFV F + + A A + ++G +V K L+VA
Sbjct: 128 LERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFI 187
Query: 190 RKEDRKA 210
K++R A
Sbjct: 188 NKDERAA 194
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 198
F+ +GT++S VM + GRS+GFGFV F +PE A KA+ + G +G+K L+V A +K+
Sbjct: 222 FSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKD 281
Query: 199 DRKAHL 216
+R+ L
Sbjct: 282 ERREML 287
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ ++G+IV + ++V
Sbjct: 21 QSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFV 80
Query: 178 ALAQRKEDRKA 210
+A+ E+ +A
Sbjct: 81 EVAKNAEEVRA 91
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 31 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
+G++ AKV+L+ GRSKG+GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L K FA F T AKV+ + G++KG+GFV F +P + A+ EMNG+ VG +P+ +
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRK 212
Query: 184 AQRKE 198
+ KE
Sbjct: 213 SSWKE 217
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 53.6 bits (123), Expect = 9e-08
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
+GL + F+ G + A+++++ RSKGFGFV F+S +EA KA+ E NG+ + + ++V
Sbjct: 48 QGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFV 107
Query: 178 ALAQRKE 198
A+ K+
Sbjct: 108 DYAKAKQ 114
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EMN + + ++V
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 184 AQRKEDRK 207
A+ +E R+
Sbjct: 110 ARPREPRR 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 184 AQRK 195
A +
Sbjct: 111 ATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 184 AQRK 195
A +
Sbjct: 111 ATER 114
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 174
+ GLR FA FG + AKV+ + G SKGFGFV +++ E++ K + M+G+ + ++
Sbjct: 69 SEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIF 128
Query: 175 VALAQRKEDRKAH 213
A+ +E +++
Sbjct: 129 AEYARPREQSQSY 141
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 150
LR FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 150
LR FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L + F+ FG I ++MLE GRS+GFGF+ F+ +++ EM+GR G + + V
Sbjct: 21 RDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISV 80
Query: 178 ALAQRKEDR 204
A+ K R
Sbjct: 81 NRAEPKLGR 89
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
RGLR F +G + AKV+L+ GRS+GFGF+ F + +A+ MNG + + + V
Sbjct: 21 RGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITV 80
Query: 178 ALAQ 189
AQ
Sbjct: 81 DKAQ 84
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 25 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 198
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 25 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 198
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 150
LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ ++GR
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 85 QSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVET 141
Query: 184 AQRKE 198
A+ E
Sbjct: 142 AKEVE 146
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 31 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 201
+ ++ AKV+ + GRSKG+GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 34.3 bits (75), Expect = 0.058
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
L+K F+ G + K+ +KG+G+V F + A +AV M G+++G + + ++
Sbjct: 253 LKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 31 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
+ ++ SAKV+++ GRSKG+GFV F E ++A+TEMNG + + V +A K
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 159
LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG ++G
Sbjct: 337 LRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNGTVIG 382
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 25 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 198
A + ++ AKV+ + GRSKG+GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.2 bits (107), Expect = 8e-06
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 31 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
+ ++ AKV+++ GRSKG+GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 159
L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG ++G
Sbjct: 343 LMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 150
GLR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ +++G+
Sbjct: 49 GLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQ 97
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 171
F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 219
Score = 33.9 bits (74), Expect = 0.077
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAY 136
Query: 190 ---RKEDRKAH 213
++ED +H
Sbjct: 137 ATGQREDTSSH 147
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AQRK 195
AQ +
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AQRK 195
AQ +
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 184 AQRK 195
AQ +
Sbjct: 82 AQSR 85
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 171
L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ + ++ +
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 32.7 bits (71), Expect = 0.18
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ F G + S+K++ +D S +GFV + A A+ +NGR + +P+ V A
Sbjct: 75 LQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAY 132
Query: 190 ---RKEDRKAH 213
++ED +H
Sbjct: 133 ATGQREDTSSH 143
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISV 85
Query: 178 ALAQRK 195
A+ K
Sbjct: 86 NKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISV 85
Query: 178 ALAQRK 195
A+ K
Sbjct: 86 NKAEPK 91
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 174
++GL+ F + AKV+ E GRS+GFGF+ F S E A+ MNG V + L
Sbjct: 232 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 291
Query: 175 VALAQRKE 198
+ LA +E
Sbjct: 292 LNLASERE 299
Score = 35.1 bits (77), Expect = 0.033
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
L + F GT+ +++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 31 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ F+ FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 322 LKQPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
Query: 190 RKEDRK 207
+++
Sbjct: 378 NPANKQ 383
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 40 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 31 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 40 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 31 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ F FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 320 LKQPFNEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
Query: 190 RKEDRK 207
+++
Sbjct: 376 NPANKQ 381
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 40 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++EF+ FG I K++ ++ RSKG+ F+ F+S ++A A+ M+ R+ + +Y+ +
Sbjct: 56 LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 115
Query: 184 AQ 189
A+
Sbjct: 116 AK 117
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F FG + SAKV ++ G SK FGFV + S A A+ MNGR +G K L V L
Sbjct: 365 LAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 22 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 189
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 190 RKEDR 204
+ +R
Sbjct: 186 TERER 190
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +1
Query: 46 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 192
SA+V+ D GRS G+GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 223 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 192
F GT+ + +++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 115 FGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRI 153
L+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG++
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG+ + + V
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKF 152
Query: 184 AQ 189
Q
Sbjct: 153 GQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 184 AQRKEDR 204
A+ + R
Sbjct: 325 AEARPPR 331
Score = 34.3 bits (75), Expect = 0.058
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
L + F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 184 AQRKEDR 204
A+ + R
Sbjct: 333 AEARPPR 339
Score = 34.3 bits (75), Expect = 0.058
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
L + F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 44.4 bits (100), Expect = 5e-05
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVGTKP 168
L++ F FG I A V+L E G S+GFGFV + S E A A+ E++GRI+G P
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR 150
L+ F+ F +T A+VM GRS+G+GFV F S + A A++ MNG+
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 147
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F+ G + A+V+ E GRS+GFGFV S +E +A++ ++G+ + + + V +
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
Query: 184 AQRKEDRKAH 213
A+ + R+ +
Sbjct: 320 AEERPPRRGY 329
Score = 34.7 bits (76), Expect = 0.044
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 144
++ L F GT+ A+V+ E +S+GFGFV SS +EA AV + N
Sbjct: 163 SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR F FG + K++++ RSKG+ F+ +++ E A A+ EMNG+I+ + V +
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDV 357
Query: 184 AQRKEDRK 207
A+ K R+
Sbjct: 358 AKTKPFRQ 365
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M+G+ + + + V L
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
Query: 178 ALAQRK 195
AQ +
Sbjct: 82 NEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81
Query: 178 ALAQRK 195
AQ +
Sbjct: 82 NEAQSR 87
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 147
L + F PFG +T V ++ S+GFGFV F S E+A +A+ ++NG
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
F+ FG + + V+ +D G S+GF F+ F S + A +A+ M+GR++G K L V +
Sbjct: 37 FSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKV 95
Query: 196 ED 201
ED
Sbjct: 96 ED 97
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 147
L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 355 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 189
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 129 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 188
Query: 190 RKEDRKA 210
+++R+A
Sbjct: 189 TEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 346 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 189
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 179
Query: 190 RKEDRKA 210
+++R+A
Sbjct: 180 TEKERQA 186
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 174
+ L F G + A+V+ + GRS+G+GFVC+SS E A+ ++G + + +
Sbjct: 190 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Query: 175 VALAQRKE 198
V LAQ K+
Sbjct: 250 VNLAQGKK 257
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 64 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 216
+ G+S+GF FV S+ E+ + ++G + L V A + + K L
Sbjct: 121 DTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 171
F+ + T + A+VM + GRS+GFGFV F + ++A A+ E+ G+ +G++ +
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQI 210
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ FA G + S K++ ++ S +GFV + A A+ +NGR + +P+ V A
Sbjct: 70 LQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAY 127
Query: 190 ---RKEDRKAH 213
++ED +H
Sbjct: 128 ASGQREDTSSH 138
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L F+ G + A+V+ + GRSKGFGFV + S +E A+ ++G + + + V+
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 184 AQRKEDRKAH 213
A+ + R+ +
Sbjct: 280 AEARPPRRQY 289
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
L + F G + +V+ + GRS+GFGFV SS E A + NG + +PL V
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 192
F+ FG I S ++ D G S+GFGF+ + S E + A+ M G+ + + + V+ A +
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
Query: 193 KEDR 204
K+ +
Sbjct: 192 KDTK 195
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
+R+ F FG I A V+ + GRSKG+GFV F E A +A MN I G +
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 138
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 138
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMN----GRIVGTKP 168
GL F FG I AKV+ + RSKGFGFV F E AT+A N GR V K
Sbjct: 24 GLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKL 83
Query: 169 LYV 177
Y+
Sbjct: 84 AYL 86
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR F FG + ++++ R KGF F+ + + EEA KA+ M+G+ + + ++V
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 184 AQRKED 201
A+ + D
Sbjct: 153 AKTRSD 158
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +1
Query: 49 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 171
A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 33.9 bits (74), Expect = 0.077
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAY 136
Query: 190 ---RKEDRKAH 213
++ED +H
Sbjct: 137 ATGQREDTSSH 147
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
+ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M+G+ + +PL +
Sbjct: 55 QSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRI 114
Query: 178 ALA 186
+ A
Sbjct: 115 SFA 117
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 156
L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+N ++V
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 67 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 210
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
F G + ++ +DG KG+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 404 FKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
L++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 22 LKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 165
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 40.3 bits (90), Expect = 9e-04
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
L++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 22 LKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 165
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
LR+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
LR+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRR 93
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
GL F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V
Sbjct: 495 GLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVR 554
Query: 181 LA 186
+A
Sbjct: 555 IA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
GL F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V
Sbjct: 495 GLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVR 554
Query: 181 LA 186
+A
Sbjct: 555 IA 556
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F+ G + A+V+ E GRS+GFGFV S+ E A+ ++G+ + + + V +
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 282
Query: 184 AQRKEDR 204
A+ + R
Sbjct: 283 AEERTRR 289
Score = 36.3 bits (80), Expect = 0.014
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 174
++ L F GT+ ++V+ + +S+GFGFV S+ EEA KAV + N V + L
Sbjct: 126 SQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLT 185
Query: 175 VALAQRKEDR 204
V A + R
Sbjct: 186 VNRAAPRGSR 195
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 180
GL+ + FG + VM + GRS+GFG+V F+S E+A A+ +G + L V
Sbjct: 18 GLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVK 75
Query: 181 LAQRKEDRK 207
+A KE+ +
Sbjct: 76 VATPKEEMR 84
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR+ F +G ++ A VM + GR +GFGFV FS P + + E + + T+ + V
Sbjct: 22 LREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHS--IDTREVDVKR 79
Query: 184 AQRKEDRK 207
A +E+++
Sbjct: 80 AMSREEQQ 87
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 13 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
R+ F +G +T +M + R +GFGFV F S E+A +V + K + V A
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRA 185
Query: 187 QRKE 198
K+
Sbjct: 186 LPKD 189
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 150
+ + + F FG + +K+++ E GRSKGF FV F + A+ MNG+
Sbjct: 58 QSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQ 108
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
+R+ F+ +G++ + K++ + R K +GFV FS+ A A+ +M+G+ +G + + V
Sbjct: 23 VRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 79
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 156
L F+ G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 35.1 bits (77), Expect = 0.033
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L K G + +VM + GRS+ FGF S E+A V ++NG V + + V +
Sbjct: 92 LTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
Query: 184 AQR 192
++
Sbjct: 152 TEK 154
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 147
GLR F+ FGTI S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
F PFGT+ S +V + G S+G G+V S A A+ ++G VG + + V
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 165
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 165
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 165
LR F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 165
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 165
LR F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 22 LRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR F FG + + G +GFGFV + E+A +A+ MN +++G + + +
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVF 122
Query: 184 AQRKEDRK 207
A+ E+RK
Sbjct: 123 AE--ENRK 128
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 159
GLR F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 90 GLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 7 GLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 159
GLR F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 90 GLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LRK F FG + + + G +GFGFV F P +A A M+G ++ + L V
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVF 111
Query: 184 AQRKEDRK 207
A+ E+RK
Sbjct: 112 AE--ENRK 117
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR+ F FG + + + G +GFGF+ F P +A +A +M+G ++ + L V
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVF 112
Query: 184 AQRKEDRK 207
A+ E+RK
Sbjct: 113 AE--ENRK 118
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 64 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
E G KGF FV F+ ++A A+ + NG + G +P+ V A K
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 34 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
G + S ++M+ +G+ G+GFV F+S +E KA+ NG + +++ +A+
Sbjct: 268 GEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 320
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 195
F G + ++++ G+ G GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 147 FKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 70 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
G G GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 526 GEHVGCGFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
L++ F +G + A +M + GR++GFGF+ F+ P A + + + ++GR V K
Sbjct: 31 LQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAK 87
Score = 35.1 bits (77), Expect = 0.033
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 165
F FGTI VM + R +GFGF+ F S E K E+NG++V K
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 111
LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 31.1 bits (67), Expect = 0.54
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 13 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 165
R F +G ++ A +M++ R +GFGFV F S + K ++NG+ V K
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 153
LRK F FG++ +V ++ G KGFGFV F+ E+A A+ +NG++
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 64 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 204
+DG +GFG V F+S EEA KA+ E +GR + + + + +AQ + +R
Sbjct: 333 DDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGER 378
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNG 147
L F PFG I K L+ K FGFV F E+A+ A+ M+G
Sbjct: 29 LHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDG 76
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.5 bits (78), Expect = 0.025
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
L++ F G +T G + FGFV ++ A KAV + V +PL V LA+
Sbjct: 308 LKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
Query: 190 RKEDRK 207
+ +RK
Sbjct: 368 PQAERK 373
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
LR G I ++M + G SKG+ FV F + + A KA+ E++ + K + +L
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSL 191
Query: 184 AQRK 195
++ K
Sbjct: 192 SETK 195
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 16 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 144
L+ FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 16 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 144
L+ FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
LR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 165
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
LR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 165
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 165
LR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 22 LRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 165
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 132
A LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 25 ADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L+ F +G I ++M + GRS+GFGFV F + + + ++ +G K + +
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 184 AQRK 195
A+ K
Sbjct: 233 AEPK 236
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 138
F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
R L FA G +T ++L+ S+GFGF+ S +A + + ++ ++ + + V
Sbjct: 89 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITV 148
Query: 178 ALAQRKEDR 204
A+R+ R
Sbjct: 149 EKARRRRGR 157
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.3 bits (75), Expect = 0.058
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 153
LR+ F FG + ++ L E G+ KGFGF+ F E + A +NG++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 34.3 bits (75), Expect = 0.058
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 144
F+ FGT+ +V + G+SK FGF+ F PE A A MN
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMN 122
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 34.3 bits (75), Expect = 0.058
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 153
L+ F +G IT V+++ GR+KGFGFV F + + A A+ R+
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.3 bits (75), Expect = 0.058
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L++ F+ +G + A V E G+ +GFGFV F++ + KA+ + + I+G KP+ V
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTH-FILG-KPVDVRK 79
Query: 184 AQRKED 201
A RK +
Sbjct: 80 AIRKHE 85
Score = 30.3 bits (65), Expect = 0.95
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 192
F FG T VM DG R +GFGFV + S E++ + V + N + K + V A
Sbjct: 140 FERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSNFHELSDKRVEVKRAIP 197
Query: 193 KE 198
KE
Sbjct: 198 KE 199
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.9 bits (74), Expect = 0.077
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
LR F+ G I K+ + DG+S+ F ++ F + +EA A+T +N + T + V +A
Sbjct: 19 LRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISVEVA 78
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.077
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 189
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 190 RKEDR 204
K +
Sbjct: 291 PKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.077
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 189
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 190 RKEDR 204
K +
Sbjct: 291 PKRPK 295
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 420
PT PP+Q P P +P + +QPP +P TQ P+
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPS 61
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
P+ PP Q P P +P + QPP P TQ P
Sbjct: 32 PSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPPTQPP 68
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 420
PT PP+Q P P +P QPP P +Q+P+
Sbjct: 44 PTQPPSQ----PPTQPPTQPPSHPPTQPPTPPPSQSPS 77
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
P+ PP+ P+ P +P + QPP +P + P
Sbjct: 28 PSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPP 64
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVGTKPLYVA 180
F+ FG + +K++ + G+S+ FGFV F + T A V E + V + V
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSITVE 86
Query: 181 LA-QRKEDRKA 210
+A QR+++R A
Sbjct: 87 VARQRRKNRSA 97
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 156
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 156
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 1 ARGLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 174
A L F +G I K +++ G+SKG+GF+ F S A A+ + +I GT+
Sbjct: 141 ADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTA 199
Query: 175 VALA 186
LA
Sbjct: 200 CQLA 203
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
+ K F P+G +T+ ++ + F FV F + E+ATKA+ + + + V A
Sbjct: 110 IEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQRSKILDRVVSVEYAL 163
Query: 190 RKEDRK 207
+ +D +
Sbjct: 164 KDDDER 169
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 91 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 216
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 58 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
++++GR +G F+ F S E A +A+ +NG + KP+ +
Sbjct: 390 LMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMII 429
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 16 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 165
++F P + K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 186 RQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 153
L+ F +G I V+++ GR KG+GFV F + + A +A+ R+
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 16 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 159
K F +G IT + +M + G+ +GFGFV ++ K + + N I+G
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD-NHIIIG 108
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPE 114
F FG + ++M + GRS+GFGFV + S +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 307 PTIPPAQR--FYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PT PP Q P P P T PPV+P T TP
Sbjct: 142 PTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTP 180
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 22 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 189
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 190 RKEDR 204
+ +R
Sbjct: 186 TERER 190
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
F G + S ++ + +G GFV F+S EA KA+ NG + L + +A
Sbjct: 584 FKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLCGNKLILGMA 639
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 156
F+ +G I ++ + G +SKGF F+ + AV +NG +V
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALV 102
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 153
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 55 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 147
V+ +G+ G+GFV F+S A KA+ E NG
Sbjct: 190 VVNHEGKHVGYGFVEFASAYGANKALEEKNG 220
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 184 AQR 192
A +
Sbjct: 215 ASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 184 AQR 192
A +
Sbjct: 215 ASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 184 AQR 192
A +
Sbjct: 215 ASK 217
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 0.72
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
R L + F P K E G SKG+ F + P A +NG +G K L V
Sbjct: 392 RELLESFGPLRGFNLVKDR-ETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRR 450
Query: 184 A 186
A
Sbjct: 451 A 451
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQ-TPASAYAN 435
P +PP + PAQ+P PP RP Q TP + + N
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPTNLPPPPPFRPGMQFTPVANFQN 93
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASA 426
P PP + P P ++P A+PPV+P P A
Sbjct: 91 PVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKA 130
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASA 426
P PP + P P ++P A+PPV+P P A
Sbjct: 163 PVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKA 202
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 307 PTIPPAQR-FYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PT PP + Y P + P ++P + +PPV P T+ P
Sbjct: 135 PTKPPVKPPVYPPTKAP-VKPPTKPPVKPPVYPPTKAP 171
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PT PP + P P ++P + PV+P T+ P
Sbjct: 103 PTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPP 139
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPAS 423
P PP P P + P + +PPV P T+ P +
Sbjct: 179 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPVSPPTKPPVT 217
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +1
Query: 307 PTIPPAQR-FYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQXXXXXXXXXXXXXX 483
P PP + Y P + P ++P +PPV P P + +
Sbjct: 187 PAKPPVKPPVYPPTKAP-VKPPVSPPTKPPVTPPVYPPKFNRSLVAVRGTVYCKSCKYAA 245
Query: 484 XXTSLGARPITG 519
T LGA+PI G
Sbjct: 246 FNTLLGAKPIEG 257
>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
to gi:3883120 gb:AAC77823
Length = 131
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +1
Query: 280 PSSAGGYFVPTIPPAQRFYGPAQMPQIRP--------TPRWTAQPPVRPSTQTPAS 423
PS+ GG + P ++ PA P++ P TP +A PP P +P +
Sbjct: 29 PSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTA 84
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 0.95
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 165
F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 0.95
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
R + + F P+G + + ++ + F FV F++ E+ATKA+ + + K + V
Sbjct: 84 RDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 137
Query: 184 AQR----KEDRKA 210
A R +EDR A
Sbjct: 138 ALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 30.3 bits (65), Expect = 0.95
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
R + + F P+G + + ++ + F FV F++ E+ATKA+ + + K + V
Sbjct: 110 RDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 163
Query: 184 AQR----KEDRKA 210
A R +EDR A
Sbjct: 164 ALREAGEREDRYA 176
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 30.3 bits (65), Expect = 0.95
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 402
P PP + P Q P ++ P T PPV+P
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYSPPVKP 505
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 313 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
+PP + P + P + P T PP++P P
Sbjct: 157 MPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPVHKP 191
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 316 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PP + P + P I+ P T PP++P P
Sbjct: 494 PPTPTYSPPVKPPPIQKPPTPTYSPPIKPPPVKP 527
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 402
P PP + P + P + P T PP++P
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYSPPIKP 555
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 313 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 402
+PP + P + P ++ P T PPV+P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYSPPVKP 708
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 313 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 402
+PP + P + P ++ P T PP++P
Sbjct: 696 VPPTPTYSPPVKPPPVQVPPTPTYSPPIKP 725
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 316 PPAQRFYGPAQMPQIRPTPRWTAQPPVRP 402
PP + P + P ++ P T PP++P
Sbjct: 293 PPTPTYSPPVKSPPVQKPPTPTYSPPIKP 321
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 316 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PP + P + P ++ P T PP++P P
Sbjct: 310 PPTPTYSPPIKPPPVQKPPTPTYSPPIKPPPVKP 343
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 22 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 147
F FG I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 310 TIPPAQRFYGPAQ--MPQIRPT-PRWTAQPPVRPSTQTPA 420
T+PP P Q +PQ +PT P+ T PP+ PSTQ P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPS 90
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMN 144
LR EF+ I +++ + S+GF FV F S E+ATKA+ N
Sbjct: 474 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 381 CPTTCKTKHSNT-CIGLRKYATTLPSSTKSSNTGCITYFS-RSKTNHRTTRCRWHGWINP 554
CPT C+ + N C+ L K A +L + N GC F SK H CR+ + P
Sbjct: 89 CPT-CRYELGNIRCLALEKVAESLEVPCRYQNLGCQDIFPYYSKLKHE-QHCRFRSYSCP 146
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 156
R L FA G +T ++L+ S+GFGF+ S +A + + ++ ++
Sbjct: 59 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 111
>At5g61100.1 68418.m07666 hypothetical protein
Length = 227
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -3
Query: 280 VGISDPFVAYAYLPCVACTVKSNGLCGLPCVELKQHKEVLFQQYVHSFQ*PLLWLLQEMK 101
+ +SD V PC C +N L + C + +E + V + P LW+ +E +
Sbjct: 20 LSLSDSLVKLKKKPCEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVPRLWICEECR 79
Query: 100 N 98
+
Sbjct: 80 D 80
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 73 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 204
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 381 CPTTCKTKHSNT-CIGLRKYATTLPSSTKSSNTGCITYFS-RSKTNHRTTRCRWHGWINP 554
CPT C+ + N C+ L K A +L + N GC F SK H CR+ + P
Sbjct: 92 CPT-CRYELGNIRCLALEKVAESLEVPCRYQNLGCHDIFPYYSKLKHE-QHCRFRPYTCP 149
>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 910
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 401 QALKHLHRLTQICNHPTVLHQELQHRLHYVL 493
+A+KH+ LTQ HP V L H L YVL
Sbjct: 85 EAIKHVKALTQFGPHP-VSSDALVHALEYVL 114
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 298 YFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
Y P PP + P P ++P P T +PP P+ TP
Sbjct: 94 YVKPPPPPTVK---PPPPPYVKPPPPPTVKPPPPPTPYTP 130
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 307 PTI-PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PT+ PP + P P ++P P +PP P+ + P
Sbjct: 85 PTVKPPPPPYVKPPPPPTVKPPPPPYVKPPPPPTVKPP 122
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 307 PTI-PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
PT+ PP + P P ++P P T P P+ TP
Sbjct: 101 PTVKPPPPPYVKPPPPPTVKPPPPPTPYTPPPPTPYTP 138
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 274 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTP-RWTAQPPVRPSTQTPASAYA 432
F + YF + PP + Y P + + P P + + PPV S P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYS 70
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 274 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTP-RWTAQPPVRPSTQTPASAYA 432
F + YF + PP + Y P + + P P + + PPV S P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYS 70
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 91 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 189
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 429
P+ PP Y P P P P PPV PS P+ Y
Sbjct: 610 PSPPPPSPLYYPPVTPS-PPPPSPVYYPPVTPSPPPPSPVY 649
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 429
P+ PP Y P P P P PPV PS P+ Y
Sbjct: 625 PSPPPPSPVYYPPVTPS-PPPPSPVYYPPVTPSPPPPSPVY 664
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 319 PAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 429
P+ R Y P P + +P A PP P + +P Y
Sbjct: 434 PSVRAYSPPPPPYSKMSPSVRAYPPPPPPSPSPPPPY 470
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 156
+ L FA G + S +++E S+GF FV SS ++A + + +N ++
Sbjct: 86 KDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 RGLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 156
+ L FA G + S +++E S+GF FV SS ++A + + +N ++
Sbjct: 85 KDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 137
>At4g11590.1 68417.m01857 F-box family protein contains weak hit to
Pfam PF00646: F-box domain
Length = 397
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 318 SCTTLLWSSTNAANTTY-TPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYF 494
+C + S +++ T+Y + + CP +S+ GL + L + +TG T
Sbjct: 92 NCEDWYFFSLSSSTTSYLSRVTCPFPDYVHYSHYVNGLISHGYGLEKFITNPSTGKSTVL 151
Query: 495 SRSKTNHRTTRC 530
R +TN + +C
Sbjct: 152 GRVQTNSKVAQC 163
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 186
+R F +G++ ++ M + R++G F+ +SPEEA A+ + + L V A
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYA 169
Query: 187 QRKEDR 204
+ K+ +
Sbjct: 170 KTKKKK 175
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 177
LR+ + +G I + +++ + G S+G+GFV + + +E +A + + ++ + + V
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIV 137
>At2g21120.1 68415.m02506 expressed protein
Length = 328
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 328 VVQEVWWEQSILLHYLVGISDPFVAYAYLPCVACT 224
+++ +WW + + +VG + FVAY Y P V T
Sbjct: 48 LLEPLWWAGMVTM--IVGEAANFVAYIYAPAVLVT 80
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAVTEMNG 147
L K F+P GT+ + + + GRS F ++ F SS TK + NG
Sbjct: 26 LLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLFSTYNG 71
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 381 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS-RSKTNHRTTRCRWHGWINP 554
CPT + C+ L K A +L K + GC F SK H T C + + P
Sbjct: 95 CPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETV-CNFRPYSCP 152
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 340 PAQMPQIRPTPRWTAQPPVRPSTQTPASA 426
P P P R T PPV P+T PA A
Sbjct: 30 PPARPTTPPPARPTTPPPVWPTTPPPAGA 58
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 67 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 210
DG++ G FV F + EEA +A+ + + +G++ + + R+E R+A
Sbjct: 237 DGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEARRA 283
>At5g62210.1 68418.m07811 embryo-specific protein-related contains
weak similarity to embryo-specific protein 3
(GI:3335171) [Arabidopsis thaliana]
Length = 223
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 301 FVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPS 405
F P+IPP Y P + P I P P PP PS
Sbjct: 167 FSPSIPPPSPPYFPPEPPSIPPPP-----PPSPPS 196
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 10 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 183
L E +G + K E G+SKG+ V F P A+ +NG +P V
Sbjct: 250 LEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEY 309
Query: 184 A 186
A
Sbjct: 310 A 310
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 307 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 417
P PP Q P P +P P QPP P + +P
Sbjct: 42 PGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSP 78
>At3g62780.1 68416.m07053 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 298
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 331 FYGPAQMPQIRPTPRWTAQPPVRP-STQTP 417
F GP ++P R+ AQ PVRP ST P
Sbjct: 134 FTGPVEVPTGGGCSRYAAQAPVRPVSTYRP 163
>At3g55690.1 68416.m06187 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 293
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 384 PTTCKTKHSNTCIGL-RKYATTLPSSTKSSNTGCITYFSRSK 506
PT K+ + T + L RKY+ S K S GC+ ++ K
Sbjct: 206 PTAVKSPSTGTGVFLPRKYSNPSDSPKKKSGDGCVKVVNQQK 247
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 280 PSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPS 405
P S Y P PP + P P + P P + QP + PS
Sbjct: 417 PPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPPSPQPYMYPS 458
>At1g29970.1 68414.m03665 expressed protein similar to GI:3128228
from [Arabidopsis thaliana] (Nature 402 (6763), 761-768
(1999))
Length = 158
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 331 FYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 441
F G A P P P++ P P T P AY N+Q
Sbjct: 24 FQGVANFPTPTPPPQF--MQPQHPITTFPGHAYQNLQ 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,347
Number of Sequences: 28952
Number of extensions: 291685
Number of successful extensions: 1459
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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