Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B17
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    27   0.33 
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    27   0.33 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    23   4.0  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    23   5.3  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.0  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    23   7.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    22   9.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    22   9.3  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 220 TLIMQLLRDNLT 231


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 24  WRNSTH*TRTRYKDSY 71
           WR  TH  R R++D Y
Sbjct: 212 WRERTHNDRYRHRDKY 227


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 77  ISVRVLVTSPRSVCRVPPSCRIP 9
           I VRV   +P   C +   C++P
Sbjct: 357 IEVRVCAPTPEDECWLSTDCKVP 379


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   LQEFCTMAELDTLNEDSL 58
           L++ CT +EL TLN D +
Sbjct: 555 LRDMCTDSELLTLNNDMM 572


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 68  RVLVTSPRSVCRVPPSC 18
           RVLVTSP  V +V   C
Sbjct: 300 RVLVTSPEEVSQVIEQC 316


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 80  IISVRVLVTSPRSVCRV-PPSCR 15
           +I    L+ +P S+C + PP CR
Sbjct: 391 VIDGSSLLVTPLSLCNIPPPMCR 413


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 17  CTMAELDTLNE 49
           C MAELD LNE
Sbjct: 493 CLMAELDHLNE 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,757
Number of Sequences: 5004
Number of extensions: 2755
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)