Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B17
         (107 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    27   2.2  
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    27   2.2  
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    27   2.2  
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    27   2.2  
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    27   2.2  
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...    27   2.2  
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222...    26   5.0  
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...    25   8.7  

>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 202 TLIMQLLRDNLT 213


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 229 TLIMQLLRDNLT 240


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 225 TLIMQLLRDNLT 236


>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 224 TLIMQLLRDNLT 235


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 443 TLIMQLLRDNLT 454


>02_05_1293 -
           35520733-35520963,35521696-35521878,35522040-35522255,
           35522936-35523022,35523125-35523331,35523426-35523650,
           35523743-35523798,35524009-35524115,35524443-35525470
          Length = 779

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 1   WXAGILHDGGTRHTERGLVTRTRTLIMQLLRDNL 102
           W    +H+   RH ERGL+   + L +  LR  +
Sbjct: 15  WQHKRMHEKLARHKERGLLRHEKQLYLARLRSEI 48


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNL 102
           TLIMQLLRDNL
Sbjct: 209 TLIMQLLRDNL 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,517
Number of Sequences: 37544
Number of extensions: 22626
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)