Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B17
         (107 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      27   2.4  
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 223 TLIMQLLRDNLT 234


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 196 TLIMQLLRDNLT 207



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 285 TLIMQLLRDNLT 296


>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 101 RLSRSSCIISVRVLVTSPRSVCRVPP 24
           R S S+C+ S R LVT   +  RV P
Sbjct: 354 RTSASNCVASSRALVTRSEAFERVDP 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,049
Number of Sequences: 59808
Number of extensions: 29303
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 16,821,457
effective HSP length: 16
effective length of database: 15,864,529
effective search space used: 301426051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)