Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B17
         (107 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    27   1.8  
AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical ...    27   2.3  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 216 TLIMQLLRDNLT 227


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 217 TLIMQLLRDNLT 228


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 70  TLIMQLLRDNLT 105
           TLIMQLLRDNLT
Sbjct: 216 TLIMQLLRDNLT 227


>AL023844-4|CAA19529.1|  208|Caenorhabditis elegans Hypothetical
           protein Y48A6B.5 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 80  IISVRVLVTSPRSVCRVPPSCRIP 9
           ++S R   T PR + +VP  C +P
Sbjct: 180 VVSTRTGKTEPRKMAKVPQKCTLP 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,629
Number of Sequences: 27780
Number of extensions: 18087
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 17
effective length of database: 12,267,938
effective search space used: 220822884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)