Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B17
         (107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   1.1  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   1.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   2.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       18   9.8  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 62 LVTSPRSVCRVPPSC 18
          LV  PR +  VPP C
Sbjct: 47 LVPEPRYIIDVPPRC 61


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 62 LVTSPRSVCRVPPSC 18
          LV  PR +  VPP C
Sbjct: 47 LVPEPRYIIDVPPRC 61


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 83  CIISVRVLVTSPRSVCRVPPSCRI 12
           C+  +  +V++   +C  PPS  I
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 48  RTRYKDS 68
           RTRYKDS
Sbjct: 333 RTRYKDS 339


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 71  VRVLVTSPRSVCRVPP 24
           +R++VT+P  V   PP
Sbjct: 323 IRLIVTAPLHVEVTPP 338


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 71  VRVLVTSPRSVCRVPP 24
           +R++VT+P  V   PP
Sbjct: 323 IRLIVTAPLHVEVTPP 338


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 9   RNSARWRNS 35
           RN+A W+N+
Sbjct: 543 RNAATWKNA 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,605
Number of Sequences: 438
Number of extensions: 205
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)