Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B17
(107 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identi... 27 1.7
At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identi... 27 1.7
At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1) i... 27 1.7
At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5) iden... 27 1.7
At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1... 27 1.7
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general... 27 1.7
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical... 27 1.7
At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical... 27 1.7
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi... 27 1.7
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica... 27 1.7
At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11) ide... 27 1.7
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi... 27 1.7
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide... 27 1.7
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide... 27 1.7
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide... 27 1.7
At2g10450.1 68415.m01098 14-3-3 protein, putative / grf15, putat... 25 8.9
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 25 8.9
>At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 246
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 224 TLIMQLLRDNLT 235
>At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 248
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 224 TLIMQLLRDNLT 235
>At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1)
identical to 14-3-3 protein GF14 psi GI:1168200,
SP:P42644
Length = 255
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 220 TLIMQLLRDNLT 231
>At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5)
identical to 14-3-3 protein GF14 upsilon GI:2232148 from
[Arabidopsis thaliana]
Length = 268
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 223 TLIMQLLRDNLT 234
>At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1)
identical to 14-3-3 GF14lambda GI:1345595 from
[Arabidopsis thaliana]
Length = 248
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 224 TLIMQLLRDNLT 235
>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general
regulatory factor 1 (GRF1) identical to 14-3-3 protein
GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
thaliana]
Length = 267
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 226 TLIMQLLRDNLT 237
>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
thaliana]
Length = 265
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 221 TLIMQLLRDNLT 232
>At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical to
GF14 mu GI:3551052, SP:Q96299 from [Arabidopsis
thaliana]
Length = 263
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 221 TLIMQLLRDNLT 232
>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
to GF14omega isoform GI:487791 from [Arabidopsis
thaliana]
Length = 259
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 221 TLIMQLLRDNLT 232
>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
to GF14 protein phi chain GI:1493805, SP:P46077 from
[Arabidopsis thaliana]
Length = 267
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 227 TLIMQLLRDNLT 238
>At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11)
identical to SP:Q9S9Z8, 14-3-3-like protein GF14 omicron
(General regulatory factor 11){Arabidopsis thaliana}
Length = 255
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230
>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
thaliana]
Length = 268
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 224 TLIMQLLRDNLT 235
>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 251
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230
>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230
>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIMQLLRDNLT
Sbjct: 219 TLIMQLLRDNLT 230
>At2g10450.1 68415.m01098 14-3-3 protein, putative / grf15, putative
contains similarity to GF14 psi chain GI:166717,
SP:P42644 from [Arabidopsis thaliana]
Length = 82
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1
Query: 70 TLIMQLLRDNLT 105
TLIM++LRDNLT
Sbjct: 33 TLIMKILRDNLT 44
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 86 SCIISVRVLVTSPRSVCRVP 27
SC+ ++ +L+T P V R+P
Sbjct: 324 SCLCAISLLITCPTLVTRIP 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,401
Number of Sequences: 28952
Number of extensions: 17142
Number of successful extensions: 58
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,070,560
effective HSP length: 17
effective length of database: 11,578,376
effective search space used: 208410768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -