Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B16
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   157   7e-40
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   116   2e-27
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   113   8e-27
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    33   0.019
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   1.6  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   2.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.7  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   6.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   8.6  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    24   8.6  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  157 bits (381), Expect = 7e-40
 Identities = 75/94 (79%), Positives = 87/94 (92%)
 Frame = +3

Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPR
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPR 123

Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 389
           HLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 124 HLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  116 bits (278), Expect = 2e-27
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
 Frame = +3

Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPRAP 416
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G   P
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  113 bits (273), Expect = 8e-27
 Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
 Frame = +3

Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI PR
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83

Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 404
           HLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 84  HLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +3

Query: 111 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 290
           +FPV RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  H
Sbjct: 23  RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81

Query: 291 LQLAIRGDEELDSL 332
           L+ A++  E+ D L
Sbjct: 82  LKHAVQSVEQFDFL 95


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +2

Query: 341 HHCWWRCYSTYT--*ISHW 391
           HHC WR  ST+    +SHW
Sbjct: 295 HHCRWRTLSTFAREQLSHW 313


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 356
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 CYSGISNSRGFRVSGKCIKGLESQTY 277
           C+SG+  +    ++ KC  GL S+TY
Sbjct: 357 CHSGLCGACFEPINAKCYCGLHSKTY 382


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATI 347
           A  L++       L+ K ITP+ L       +E+ ++IKA +
Sbjct: 319 ANALDMTDRFLPRLRTKHITPKLLSFTPYTAQEISTIIKARL 360


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 215 IFQNSSRINCCRSSDTTVTCSSIFEMSVDSSYW 117
           IF N   IN    SDT+       E S+ S +W
Sbjct: 391 IFLNEDHINSSGPSDTSSHMLETDESSIHSRHW 423


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 114 TVSPLWPISIQLSPWLYQ 61
           T S LW  S+++ PWL Q
Sbjct: 67  TGSVLWKTSVKVVPWLLQ 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,113
Number of Sequences: 5004
Number of extensions: 29841
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)