Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B16
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52740.1 68414.m05962 histone H2A, putative similar to histon... 179 8e-46
At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800 178 1e-45
At2g38810.3 68415.m04767 histone H2A, putative strong similarity... 177 2e-45
At2g38810.2 68415.m04766 histone H2A, putative strong similarity... 177 2e-45
At2g38810.1 68415.m04765 histone H2A, putative strong similarity... 177 2e-45
At4g13570.1 68417.m02114 histone H2A, putative similar to histon... 138 1e-33
At3g20670.1 68416.m02616 histone H2A, putative strong similarity... 122 1e-28
At5g54640.1 68418.m06803 histone H2A identical to histone H2A Ar... 119 7e-28
At4g27230.1 68417.m03910 histone H2A, putative strong similarity... 119 7e-28
At1g51060.1 68414.m05740 histone H2A, putative similar to histon... 119 7e-28
At1g08880.1 68414.m00988 histone H2A, putative Strong similarity... 117 4e-27
At1g54690.1 68414.m06235 histone H2A, putative strong similarity... 116 9e-27
At5g02560.1 68418.m00190 histone H2A, putative similar to histon... 112 1e-25
At5g59870.1 68418.m07507 histone H2A, putative similar to histon... 109 8e-25
At5g27670.1 68418.m03317 histone H2A, putative similar to histon... 107 2e-24
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 31 0.25
At4g27840.1 68417.m03998 expressed protein 30 0.75
At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /... 29 1.3
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen... 29 1.7
At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi... 28 2.3
At1g03670.1 68414.m00346 ankyrin repeat family protein contains ... 28 2.3
At5g20630.1 68418.m02450 germin-like protein (GER3) identical to... 27 4.0
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 27 4.0
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-... 27 5.3
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-... 27 5.3
At3g01720.1 68416.m00107 expressed protein 27 7.0
At5g42290.1 68418.m05147 transcription activator-related contain... 26 9.3
At4g26440.1 68417.m03804 WRKY family transcription factor identi... 26 9.3
>At1g52740.1 68414.m05962 histone H2A, putative similar to histone
H2A.F/Z Arabidopsis thaliana GI:2407800; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 134
Score = 179 bits (435), Expect = 8e-46
Identities = 86/96 (89%), Positives = 92/96 (95%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGR+HR LK R+T+HGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI+PR
Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPR 94
Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 395
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 95 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 130
>At3g54560.1 68416.m06037 histone H2A.F/Z identical to GI:2407800
Length = 136
Score = 178 bits (433), Expect = 1e-45
Identities = 85/96 (88%), Positives = 91/96 (94%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 395
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
>At2g38810.3 68415.m04767 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 2e-45
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 395
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.2 68415.m04766 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 2e-45
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 395
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At2g38810.1 68415.m04765 histone H2A, putative strong similarity to
histone H2A.F/Z Arabidopsis thaliana GI:2407800;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 177 bits (432), Expect = 2e-45
Identities = 84/96 (87%), Positives = 91/96 (94%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
+QFPVGRIHR LK R ++HGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 288 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 395
HLQLAIRGDEELD+LIK TIAGGGVIPHIHKSL+ K
Sbjct: 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNK 132
>At4g13570.1 68417.m02114 histone H2A, putative similar to histone
H2A.F/Z from Arabidopsis thaliana GI:2407800, histone
H2A.F/Z Strongylocentrotus purpuratus SP|P08991, histone
H2A variant Drosophila melanogaster SP|P08985; contains
Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 118
Score = 138 bits (335), Expect = 1e-33
Identities = 66/88 (75%), Positives = 72/88 (81%)
Frame = +3
Query: 114 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 293
F V RIH+ LKNR ++H VGAT VY +ILEYLT EVL+LA N SKDLKVKRITPRHL
Sbjct: 31 FQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHL 90
Query: 294 QLAIRGDEELDSLIKATIAGGGVIPHIH 377
QLAIRGDEELD+LIK TI GG VIPHIH
Sbjct: 91 QLAIRGDEELDTLIKGTIIGGSVIPHIH 118
>At3g20670.1 68416.m02616 histone H2A, putative strong similarity to
histone H2A GB:AAF64418 GI:7595337 from Arabidopsis
thaliana, Triticum aestivum GI:536892; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 122 bits (293), Expect = 1e-28
Identities = 65/104 (62%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LKN + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPRAP 416
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASKP 127
>At5g54640.1 68418.m06803 histone H2A identical to histone H2A
Arabidopsis thaliana GI:7595337
Length = 130
Score = 119 bits (287), Expect = 7e-28
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPRAP 416
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKP 127
>At4g27230.1 68417.m03910 histone H2A, putative strong similarity to
histone H2A Arabidopsis thaliana GI:7595337, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 119 bits (287), Expect = 7e-28
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPRAP 416
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKP 127
>At1g51060.1 68414.m05740 histone H2A, putative similar to histone
H2A GI:7595337 from Arabidopsis thaliana, Triticum
aestivum GI:536892, Picea abies SP|P35063; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 132
Score = 119 bits (287), Expect = 7e-28
Identities = 64/104 (61%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPRAP 416
H+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G P
Sbjct: 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127
>At1g08880.1 68414.m00988 histone H2A, putative Strong similarity to
histone H2A Cicer arietinum SP|O65759, Picea abies
SP|P35063; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4; ESTs gb|ATTS3874,gb|T46627,gb|T14194 come
from this gene
Length = 142
Score = 117 bits (281), Expect = 4e-27
Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK+ + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PR
Sbjct: 31 LQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 404
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 90 HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At1g54690.1 68414.m06235 histone H2A, putative strong similarity to
histone H2A GI:3204129 SP|O65759 from Cicer arietinum,
Picea abies SP|P35063; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 142
Score = 116 bits (278), Expect = 9e-27
Identities = 61/100 (61%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK + RVGA A VY +A+LEYL AEVLELAGNA++D K RI PR
Sbjct: 31 LQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89
Query: 288 HLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 404
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K G
Sbjct: 90 HIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG 129
>At5g02560.1 68418.m00190 histone H2A, putative similar to histone
H2A from Pisum sativum SP|P25470, Zea mays SP|P40280,
Petroselinum crispum SP|P19177; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 153
Score = 112 bits (269), Expect = 1e-25
Identities = 61/98 (62%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R+LK S RVG A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 33 LQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 91
Query: 288 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 398
H+ LA+R DEEL +L+K TIA GGV+P+I+ L+ KK
Sbjct: 92 HVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKK 129
>At5g59870.1 68418.m07507 histone H2A, putative similar to histone
H2A Petroselinum crispum SP|P19177, Lycopersicon
esculentum SP|P25469, Zea mays SP|P40280; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 109 bits (262), Expect = 8e-25
Identities = 60/102 (58%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 33 LQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPR 91
Query: 288 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPR 410
HL LAIR DEEL L+ TIA GGV+P+I+ L+ KK +
Sbjct: 92 HLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATK 133
>At5g27670.1 68418.m03317 histone H2A, putative similar to histone
H2A Lycopersicon esculentum SP|P25469, Pisum sativum
SP|P25470, Petroselinum crispum SP|P19177; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 107 bits (258), Expect = 2e-24
Identities = 60/98 (61%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Frame = +3
Query: 108 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 287
LQFPVGRI R+LK + R G+ A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 34 LQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPR 92
Query: 288 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 398
HL LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 93 HLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 126 RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 305
R+ RH HG GA AAI +YL +V + D +R+ R +I
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFDVYNITQGVKTDFDTRRLIRRVEDSSI 252
Query: 306 RGDEELDSLIKAT 344
E++D+ ++ +
Sbjct: 253 LLVEDIDTSLEGS 265
>At4g27840.1 68417.m03998 expressed protein
Length = 260
Score = 29.9 bits (64), Expect = 0.75
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 207 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR-GDEELDSLIKATIAGGGVIPHIHKS 383
L+ + AE+ + GN +KDL+++ +PR + I+ ++ LDS GG ++P + K
Sbjct: 117 LDPVFAEIAAIGGNHNKDLELEFGSPRSIAREIKSNNQSLDS--SKGRKGGALMPLLGKP 174
Query: 384 L 386
L
Sbjct: 175 L 175
>At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 342
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 279 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGGPRAPV 419
TP L IR +E +L +T G V +IH + GK GPR P+
Sbjct: 66 TPNGSALVIRKNETY-TLQPSTFRGPCVSSNIHIQIDGKLEGPRKPI 111
>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
{Arabidopsis thaliana}; identical to cDNA syntaxin of
plants 61 (SYP61) GI:16041649
Length = 245
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 243 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 398
G D V+ + R + L + DEELD L K+ GGV IH L+ ++
Sbjct: 137 GGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQE 188
>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1077
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 168 RVGATAAVY---SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQ 296
++G VY S IL +L A +L ++ NAS++L V RI+ + Q
Sbjct: 483 KIGRLVEVYVYGSWQILAFLAAVLLLISQNASRNLAVTRISKKKTQ 528
>At1g03670.1 68414.m00346 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 616
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 107 LTVSSRKNPQTSQK*NYKSRSCRSYGSSLFCCYSGI 214
L + R++P + N + R+C SYG+S+ CY GI
Sbjct: 231 LGIVLRQDPGLIELRNEEGRTCLSYGASM-GCYEGI 265
>At5g20630.1 68418.m02450 germin-like protein (GER3) identical to
germin-like protein subfamily 3 member 3 [SP|P94072]
Length = 211
Score = 27.5 bits (58), Expect = 4.0
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 231 LELAGNASKDLKVKRITPRHLQLAIRGDEELD-SLIKATIAGGGVIP-HIH 377
L AGN S +K +TP A G L SL + +AGGGVIP H H
Sbjct: 57 LGTAGNTSNIIKAA-VTPAFAP-AYAGINGLGVSLARLDLAGGGVIPLHTH 105
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 153 FYF*DVCGFFLLETVSPLWPISIQLSPWLYQNPCPLYHQP 34
FY +C F+L + S P+ + +P +Q+P Y +P
Sbjct: 135 FYRCSICNFYLDLSCSQSIPLLLVANPKSHQHPLVFYRRP 174
>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1648
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 QSGLTVSSRKNPQTSQK*NYKSRSCR-SYGSSLFCCYSGISNSRGFRVSGKCI 253
Q+GL +S+ T+Q + +C YG+S C Y + R +R+S K +
Sbjct: 767 QNGLRMSASIVADTAQCFSTHHFACLVGYGASAVCPYLALETCRQWRLSNKTV 819
>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1622
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 QSGLTVSSRKNPQTSQK*NYKSRSCR-SYGSSLFCCYSGISNSRGFRVSGKCI 253
Q+GL +S+ T+Q + +C YG+S C Y + R +R+S K +
Sbjct: 741 QNGLRMSASIVADTAQCFSTHHFACLVGYGASAVCPYLALETCRQWRLSNKTV 793
>At3g01720.1 68416.m00107 expressed protein
Length = 802
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 119 WKL*ARSGR---SRYSFRLGFTRILARFTTSHFETCN 18
W+L A GR + Y + +G +L R T H E C+
Sbjct: 141 WELGAERGRPFAAHYGYLVGCDNLLVRLHTKHPELCD 177
>At5g42290.1 68418.m05147 transcription activator-related contains
weak similarity to beta-cell E-box transcription
activator 1 gi|529197|gb|AAA65702
Length = 110
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 264 KVKRITPRHLQLAIRGDEELD 326
+VK +TP+H Q A GD ++D
Sbjct: 82 EVKTLTPKHKQPASSGDRDVD 102
>At4g26440.1 68417.m03804 WRKY family transcription factor identical
to WRKY transcription factor 34 (WRKY34) GI:15990591
from [Arabidopsis thaliana]
Length = 568
Score = 26.2 bits (55), Expect = 9.3
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 92 IGQSGLTVSS-RKNPQTSQK*NYKSRSCRSYGSSLFCCYSGISNSRGFRVSGKCIKGLE- 265
I SGL ++ P SQ +Y+ R G S+ CC + K +KG E
Sbjct: 139 ISGSGLDPTNIALEPDDSQ--DYEERQLGGLGDSMACCAPADDGYNWRKYGQKLVKGSEY 196
Query: 266 SQTYHPKTFATC 301
++Y+ T C
Sbjct: 197 PRSYYKCTHPNC 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,963,952
Number of Sequences: 28952
Number of extensions: 167230
Number of successful extensions: 491
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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