Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B15
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 95 2e-21
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 95 4e-21
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 29 0.16
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.28
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 2.6
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 3.4
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 6.0
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 24 6.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.0
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 24 6.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 24 6.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 6.0
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 6.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 6.0
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 24 7.9
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 24 7.9
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 24 7.9
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 24 7.9
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 95.5 bits (227), Expect = 2e-21
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
V +DA PFR WYE+HY + +G KG K T +S+ +K+ +R SKV+
Sbjct: 102 VQIDAAPFRVWYETHYGILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSA 155
Query: 189 LEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYL 302
LE QF GRL A V+SRPGQ GR DGYILEG+EL FYL
Sbjct: 156 LETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYL 193
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 94.7 bits (225), Expect = 4e-21
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
V +DA PFR WYE+HY + +G KG K T +S+ +K+ +R SKV+
Sbjct: 102 VQIDAAPFRVWYETHYGILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSA 155
Query: 189 LEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYL 302
LE QF GRL A V+SRPGQ GR DGYILEG+EL FYL
Sbjct: 156 LETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYL 193
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 29.5 bits (63), Expect = 0.16
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 63 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 191
PL R+K +LT E + + S T+KK+ + + SK G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.28
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 176
V DA ++ E ++ +KK +KL EA+ K++ +K KK+ +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 104 LSLSELGTFLPSEW 63
LSL+E GTFL EW
Sbjct: 1554 LSLNECGTFLQKEW 1567
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 54 YLLPLGRKKGAKLTE 98
Y+LPLGRK K TE
Sbjct: 492 YILPLGRKTARKCTE 506
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 57 LLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
+LPL K EAE+ ++ K T LSR+ +K + G
Sbjct: 152 VLPLITKHLRLFVEAEQLVVGNKAVSFTDHSELSREVAAKYDHG 195
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 6.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 47 FIPLPERCGIHHD 9
F+P PE C I+H+
Sbjct: 477 FLPAPEECNIYHN 489
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 134 KDSEEVPEQAAPVQGR 181
K +EE+PE P++GR
Sbjct: 221 KKAEEIPESLPPIKGR 236
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.2 bits (50), Expect = 6.0
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 27 PFRQWYESHYLLPLGRKKGAKLTE--AEEAIINKKR-SQKTAKKYLSRQRLSKVE 182
PF+QW E L L K+ KL E +EE+ + K++ + + ++ + L K++
Sbjct: 334 PFKQWLEQ---LKLKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLD 385
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/73 (19%), Positives = 33/73 (45%)
Frame = +3
Query: 21 ATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQ 200
+TP + H + KKG+K+ A++ ++R + A++ + + K +E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813
Query: 201 FHTGRLLACVASR 239
+LA + +
Sbjct: 814 TDPQTILAILKQK 826
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.2 bits (50), Expect = 6.0
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -3
Query: 345 ILHISLCPLGFDLHLGRTPALDLPKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLPWTG 166
I+HI+LC + R L P H RD + A + + V C + P + W
Sbjct: 84 IVHIALCAAYLIVIDSRNTVLSYPLMKH-RDLSKPAATYFLKQKVTCTVTDP--TIDWVF 140
Query: 165 AACSGTSSLSFD 130
S S + +D
Sbjct: 141 FGMSDGSVVPWD 152
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 87 KLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
+L E+E+ + S ++KY SRQR + G
Sbjct: 717 RLIESEDKGYRSRSSSPASRKYRSRQRYRRSYAG 750
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -3
Query: 210 QCGIAPPD--HPLPWTGAACSGTSSLS 136
+ G A P HP PW A+ S +SS S
Sbjct: 395 ESGAASPQAGHPPPWAAASTSVSSSTS 421
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 47 KPLPAATRKEERCQAH*G*GSHHKQK-TQSKDSE 145
KP + EER ++ G SHH + + +DSE
Sbjct: 353 KPRSTSVSSEERSRSRAGSFSHHSESENEDEDSE 386
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +3
Query: 12 VVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRL 170
V +AT Q+Y R G + E+ IN R + +YL RL
Sbjct: 400 VANATDVVQFYLKKKYTRSKRNDGLYTSAVEDIKINSLRVESLVNEYLKTNRL 452
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 200 LLLQTTLYLGQALPAQVLLRCLLTAFFVYDGFLSLSELGTFLPSE 66
L + T L A P +++ ++ + + LSL E+ FLP++
Sbjct: 87 LFVSTGKSLKNAGPGSLMINFIILSAMILALILSLGEMCCFLPNQ 131
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 161 AAPVQGRGWSGGAIPHWTAVSMCGESARSVRSRRWLHFG 277
AAP+ W+ P W + E R+V R FG
Sbjct: 377 AAPLGEMTWARMDYPKWQDIKAFHEGVRAVYPDRMFAFG 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,792
Number of Sequences: 5004
Number of extensions: 30546
Number of successful extensions: 95
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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