Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B15
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 138 9e-34
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 34 0.037
SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2) 32 0.15
SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09) 32 0.15
SB_11| Best HMM Match : E6 (HMM E-Value=2.2) 31 0.35
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.61
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 29 1.1
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 28 2.4
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_17834| Best HMM Match : Phage_attach (HMM E-Value=4) 27 4.3
SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_42722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 5.7
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 5.7
SB_48901| Best HMM Match : Astacin (HMM E-Value=2.8e-15) 27 5.7
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 27 5.7
SB_58821| Best HMM Match : RecR (HMM E-Value=1.6) 26 7.5
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 26 7.5
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 26 9.9
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 26 9.9
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 26 9.9
SB_54203| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 26 9.9
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 138 bits (335), Expect = 9e-34
Identities = 63/107 (58%), Positives = 82/107 (76%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
V VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NKKRS +K +R+ +KV G
Sbjct: 86 VQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKVAPG 145
Query: 189 LEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYLSEDQIQEGK 329
+EEQF TGRL ACV+SRPGQ GR DGYILEG+ELEFY+ + + ++ K
Sbjct: 146 MEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 33.9 bits (74), Expect = 0.037
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 123 KRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYILEGQ 284
++S+K +K + +L+ +EG E H G LL S C R GY ++G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_47353| Best HMM Match : Neur_chan_memb (HMM E-Value=3.2)
Length = 133
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 15 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 182
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QRL +E
Sbjct: 53 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 108
>SB_30690| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-09)
Length = 193
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 15 VDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 182
+ A R+W+E K+ A+L +I+ + +K AK+Y+ +QRL +E
Sbjct: 87 IKANNARKWWEKEMRANQTAKELARLASWRTWVISGETVEKKAKQYVFKQRLQDIE 142
>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
Length = 485
Score = 30.7 bits (66), Expect = 0.35
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Frame = +3
Query: 30 FRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYL---SRQRLSKVEGGLE-- 194
F W + +L + +G + E +E + N +KT K YL + + K++G E
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231
Query: 195 ----EQFHTGRLLACVASRPGQCGRADGYILEGQ-ELEF-YLSEDQIQEGK 329
E FH L CV + + DGY L G + F Y +I E K
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMGPLHITFLYSKSHEIFESK 282
>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 120 KKRSQKTAKKYLSRQRLSKVEGGLEE 197
K+R QK K Y RQR +++ LEE
Sbjct: 15 KRRKQKATKSYAERQRRTRINKSLEE 40
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 30 FRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 182
F Q H++ +KKG + + A+ +R + AK+ LS Q ++VE
Sbjct: 930 FDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQHQARVE 980
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 330 LCPLGFDLHLGRTPALDLPKCNHRR 256
LCP GF+L L + D+ +C + R
Sbjct: 350 LCPPGFELSLDKRTCTDINECGYNR 374
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 102 EEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYILEG 281
E ++ KR K+ L + SK++ E+ RL AC+ G C A+ + EG
Sbjct: 1353 ETLVLAVKRRMKSLLAELDSRSESKLDKLRTEKV---RLEACLRGAQGSCEFAETVLSEG 1409
Query: 282 QELE 293
+LE
Sbjct: 1410 NDLE 1413
>SB_17834| Best HMM Match : Phage_attach (HMM E-Value=4)
Length = 438
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -3
Query: 306 HLGRTPALDLPKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLPWTG 166
HL R D P+ R TD+ P TA Q P P TG
Sbjct: 23 HLARKTPRDYPRARARAHDTDQPSDPCQRTADQNPYPTQRDPHPGTG 69
>SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 19 MPHLSGSGMKATTCCHSEGRKVPSSLRLRKPS*TKNAVKRQRRST*AGS 165
+ L ++ H+EGRK P + + S T + +R RRS+ A S
Sbjct: 119 LSRLENEQLERRQALHAEGRKPPVNRAKERRSSTAHQKRRSRRSSIAMS 167
>SB_42722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 137 DSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARS 247
D + V E+ A +GR W GG +P+ S+ +AR+
Sbjct: 79 DVDAVGERGA-TKGRQWPGGVMPYVIDSSLSSSAARA 114
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 276 PKCNHRRDRTDRADSPHMLTAVQCGIAPPDHPLPWTGA 163
P C R +D DS ML G P D +P T A
Sbjct: 1934 PACGLRGSTSDLHDSISMLPETTIGPVPQDSSVPTTSA 1971
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 16 WMPHLSGSGMKATTCCHSEGRKVPSSLRL 102
WM HL + CH+EGR + L L
Sbjct: 1884 WMKHLENWPLHMPIVCHAEGRTTAAILLL 1912
>SB_48901| Best HMM Match : Astacin (HMM E-Value=2.8e-15)
Length = 249
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 137 DSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARS 247
D + V E+ A +GR W GG +P+ S+ +AR+
Sbjct: 79 DVDAVGERGA-TKGRQWPGGVMPYVIDSSLSSSAARA 114
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 69 GRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 182
G+KK +K E NKKR +K KK ++ SK+E
Sbjct: 373 GKKKTSKDATEESEAPNKKRKEKKKKK-KKKKASSKIE 409
>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
Length = 223
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 45 ESHYLL--PLGRKKGAKLTEAEEAIINKK 125
E H+LL PL +KK KLT+ E I N K
Sbjct: 125 EDHFLLHCPLYKKKREKLTKTMEEIENVK 153
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 57 LLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKV--EGGLEE 197
LLP ++ LTE +++ +Q+T +K++ +S + EG LE+
Sbjct: 942 LLPTPEERAKALTELLTETSDRQSTQQTGRKFMINLLISSLMAEGSLEQ 990
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 84 AKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASR 239
A L A++ I ++ + K LS + E GLEE + L ASR
Sbjct: 126 ANLENAQQKIEALQKESERLKDKLSEMSVPNSEDGLEELHNENEFLKIQASR 177
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 141 AKKYLSRQRLSKVE-GGLEEQ---FHTGRLLACVASRPGQC 251
+K YL + K + GG E+ H + AC+A+ P QC
Sbjct: 1249 SKTYLKKDEALKADWGGFEDPESGMHHYEVAACMANSPQQC 1289
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 141 AKKYLSRQRLSKVE-GGLEEQ---FHTGRLLACVASRPGQC 251
+K YL + K + GG E+ H + AC+A+ P QC
Sbjct: 2109 SKTYLKKDEALKADWGGFEDPESGMHHYEVAACMANSPQQC 2149
>SB_54203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 84 AKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFH 206
AK E EAIIN +++ + + + + + G L QFH
Sbjct: 217 AKTQEEAEAIINTMQNEMQCNEPIVTEVIEGITGNLCVQFH 257
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 84 AKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASR 239
A L A++ I ++ + K LS + E GLEE + L ASR
Sbjct: 2654 ANLENAQQKIEALQKESERLKDKLSEMSVPNSEDGLEELHNENEFLKIQASR 2705
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,738
Number of Sequences: 59808
Number of extensions: 255626
Number of successful extensions: 717
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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