Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B15
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 116 3e-27
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 113 2e-26
At5g10000.1 68418.m01158 ferredoxin family protein similar to Fe... 29 0.87
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr... 29 1.2
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 28 1.5
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 2.7
At2g36890.1 68415.m04524 myb family transcription factor (MYB38)... 27 3.5
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 4.6
At5g11540.1 68418.m01346 FAD-binding domain-containing protein s... 27 4.6
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote... 27 4.6
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran... 27 4.6
At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family pr... 27 4.6
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 26 6.1
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p... 26 6.1
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 26 8.1
At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin; g... 26 8.1
At4g14120.1 68417.m02179 expressed protein 26 8.1
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 26 8.1
At3g27570.1 68416.m03445 expressed protein 26 8.1
>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
protein S8 - Zea mays, PIR:T04088
Length = 222
Score = 116 bits (280), Expect = 3e-27
Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 10/117 (8%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKK-GAKLT-----EAEEAII----NKKRSQKTAKKYLS 158
V VDA PF+QWY SHY + LGRKK A T E EEA + K+S +K S
Sbjct: 103 VQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIAS 162
Query: 159 RQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYLSEDQIQEGK 329
RQ ++ +E+QF +GRLLAC++SRPGQCGRADGYILEG+ELEFY+ + Q ++GK
Sbjct: 163 RQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGK 219
>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
Length = 210
Score = 113 bits (273), Expect = 2e-26
Identities = 57/107 (53%), Positives = 72/107 (67%)
Frame = +3
Query: 9 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGG 188
V VDA PF+Q Y HY + +GRKK + EE K+S +K RQ ++
Sbjct: 103 VQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSH 158
Query: 189 LEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYLSEDQIQEGK 329
LEEQF +GRLLAC+ASRPGQCGRADGYILEG+ELEFY+ + Q ++GK
Sbjct: 159 LEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGK 205
>At5g10000.1 68418.m01158 ferredoxin family protein similar to
Ferredoxin, chloroplast precursor from Arabidopsis
thaliana [SP|P16972]; contains Pfam profile: PF00111
2Fe-2S iron-sulfur cluster binding domains
Length = 148
Score = 29.1 bits (62), Expect = 0.87
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +3
Query: 237 RPGQCGRADGYILEG---QELEFYLSEDQIQEGKVI-CV 341
R G CG G ++ G Q L +L E+QIQ+G ++ C+
Sbjct: 92 RSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCI 130
>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1030
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +3
Query: 150 YLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRADGYILEGQELEFYLSEDQ 314
YL+ R + + G E + T RL G C R Y L+ E S DQ
Sbjct: 453 YLATDRFNLINGSTPEYYKTARLSPQSLKYYGLCLRRGSYKLQLHFAEIMFSNDQ 507
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 36 QWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 176
QW+ + + ++E+ I NKK+S+ +K S+Q+ SK
Sbjct: 539 QWFSQNIFAEAVEEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKASK 585
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 104 GSHHKQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWT 214
G K K Q ++EVPE PVQ GW HWT
Sbjct: 663 GDFEKDK-QEVLNQEVPEPEKPVQVAGWG-----HWT 693
>At2g36890.1 68415.m04524 myb family transcription factor (MYB38)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 298
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 173 QGRGWSGGAIPHWTAVSMCGESARSVRSRRWLHFGR 280
QG G + A+PH + CG+S R RWL++ R
Sbjct: 32 QGTGGNWIALPHKAGLRRCGKSCR----LRWLNYLR 63
>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 267
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 137 DSEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVRSR 259
D EE E P +S A+P W +S CG+ SV+ +
Sbjct: 205 DVEEGGETVFPAAKGNYS--AVPWWNELSECGKGGLSVKPK 243
>At5g11540.1 68418.m01346 FAD-binding domain-containing protein
similar to hypothetical protein [Oryza sativa
(japonica)][GI:18844891]; contains PF01565 FAD binding
domain
Length = 585
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 170 VQGRGWSGGAIPHWTAVSMCGESARSVRSRRWLHFGRS 283
V+G G+S G P+W VS+ G + W G S
Sbjct: 138 VEGAGFSIGTSPYWEGVSIGGLISTGSHGSSWSGRGGS 175
>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
kinase, putative similar to Z. mays leucine-rich repeat
transmembrane protein kinase LRRTPK 1, GenBank accession
number AF023164
Length = 776
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 279 LPKCNHRRDRTDRADSPHMLTA 214
LPKC RR+ +R PH + A
Sbjct: 339 LPKCARRREHANRVFKPHQVGA 360
>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
domain; similar to Metaxin 1 (component of a preprotein
import complex) (Swiss-Prot:P47802) [Mus musculus];
Length = 315
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 218 QPSSVE-LLLQTTLYLGQALPAQVLLRCLL 132
+PSS++ LL L++ QALP +LRC L
Sbjct: 191 RPSSLDAFLLSHILFIIQALPVTSVLRCKL 220
>At1g49770.1 68414.m05581 basic helix-loop-helix (bHLH) family
protein contains similarity to putative bHLH
transcription factor GB:AAC63587 GI:3738090 from
[Arabidopsis thaliana]
Length = 308
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 51 HYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 182
H LLP K K T +EA+ + K ++T +K L Q+L K++
Sbjct: 93 HALLPQLPPKADKSTIVDEAVSSIKSLEQTLQK-LEMQKLEKLQ 135
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 110 HHKQKTQSKDSEEVPEQAAPVQGR 181
HH Q + KD EEV + P++ R
Sbjct: 73 HHNQNSAKKDQEEVSQVPLPLECR 96
>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
protein / Kunitz family protein similar to trypsin
inhibitor propeptide [Brassica oleracea] GI:841208;
contains Pfam profile PF00197: Trypsin and protease
inhibitor
Length = 215
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 12 VVDATPFRQWYESHYLLPLGRKKGAKLTEA 101
VVD ++ES+Y+LP+ R +G LT A
Sbjct: 30 VVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 90 AWHLSSFRVAAGSGFHTTA*KVWHPPRPS 4
AWH + + +GS HTT K W RP+
Sbjct: 403 AWHPIGYLLCSGSNDHTT--KFWCRNRPA 429
>At5g07540.2 68418.m00864 glycine-rich protein (GRP16) oleosin;
glycine-rich protein 16 (GRP16) PMID:11431566
Length = 190
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 182 GWSGGAIPHWTAVSMCGESARSVRSRRWLHFGRS 283
G SGGA+ T S+ + RSV R W GRS
Sbjct: 154 GASGGAVGRRTWRSVGRRTWRSVGRRTWRSVGRS 187
>At4g14120.1 68417.m02179 expressed protein
Length = 368
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 31 SGSGMKATTCCHSEGRKVPSSLRLRK 108
S SG K + CC + KVP S+ R+
Sbjct: 268 SSSGNKISLCCRRKLFKVPGSVNYRR 293
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 238 RLATHANSRPVWNCSSRPP 182
RLA+ +S P +N SSRPP
Sbjct: 47 RLASEMSSNPDYNNSSRPP 65
>At3g27570.1 68416.m03445 expressed protein
Length = 379
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 155 EQAAPVQGRGWSGGAIPHWTAVSMCGESA 241
E+ PV+ +G++GG VS C E A
Sbjct: 304 EEREPVEQKGFTGGCCQGANGVSCCQEQA 332
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,403
Number of Sequences: 28952
Number of extensions: 181283
Number of successful extensions: 557
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -