Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B14
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.036
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.048
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.083
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.11
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.15
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.19
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.34
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.44
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.44
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 0.59
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 0.77
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 0.77
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.4
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 1.8
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 26 2.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 4.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 4.1
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 4.1
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 5.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 5.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 5.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 5.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 5.5
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 5.5
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 24 7.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 9.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 9.5
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.1 bits (77), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 253 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
LD P ++ + +YIGNL D+ ED+I +FS +GE ++
Sbjct: 15 LDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.036
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGE 378
RL++ NLT ED++++LF P+G+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQ 348
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
L + N + +E+ +LFSP+GE
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGE 531
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.5 bits (68), Expect = 0.048
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 283 VKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYG 375
V+ +G R +++GNL N +TEDEI+ P+G
Sbjct: 199 VQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Score = 27.1 bits (57), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQN 357
P + + ++ G +YIGN+ D T +EI N
Sbjct: 310 PVLQKPDLIMTGNRTVYIGNIHADTTIEEICN 341
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGE 378
G SR +YIGN + +T + ++ F +GE
Sbjct: 411 GASRNIYIGNADDSLTIERLKEDFEEFGE 439
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.7 bits (66), Expect = 0.083
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+ +YI NL ++TE E +LF +GE L
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSL 290
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.3 bits (65), Expect = 0.11
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPY 372
RL++GNL NDV ++ + FS Y
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEY 53
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.9 bits (64), Expect = 0.15
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGE 378
++ +++GNL VTE + N F P+GE
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGE 31
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.19
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 178 QDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSE--VKFNGRSRLYIGNLTNDVTEDEI 351
+DN K ++ ++ + + L DL +I E V+ + + LY+ N E +I
Sbjct: 623 EDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFPPTYDELDI 682
Query: 352 QNLFSPYGESAEL 390
LFS YG ++
Sbjct: 683 TKLFSAYGNVVDV 695
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 274 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+S + GR LY+ N+ V E +++ F YG+
Sbjct: 749 RSGAVYEGRE-LYVTNIDFKVNEKDVETFFRDYGQ 782
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.34
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+++++G + D TE+E +N F+ +G
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFG 271
Score = 25.8 bits (54), Expect = 2.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGE 378
+++IG L + T+D +++ F +GE
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGE 188
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.44
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
S +Y+GN+ + ++++EI FS YG+
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQ 42
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.44
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ + ++YI NL ++ ED++ L P+G+
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGD 335
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.9 bits (59), Expect = 0.59
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+Y+GNL+ TE++I LFS GE
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGE 57
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 0.77
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
S +++G L+ V+E+E++ LF +GE
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGE 328
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 0.77
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 121 FLRLVLDQIVCFLVSDLAHIGPKTRPSADFGCSD 20
FL+LV D++ FL + + PK+RPS+ D
Sbjct: 580 FLQLVCDEVPPFLDGNRDGVHPKSRPSSKVNLVD 613
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 298 RSRL-YIGNLTNDVTEDEIQNLFSPYG 375
RS++ ++ LTNDVT+ E+++ F+ +G
Sbjct: 242 RSKIVHVAGLTNDVTQLELESWFTNHG 268
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 1.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
+Y+GNL + ++ LF P+G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 2.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
L++ + + + EDE+Q +FS +G
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFG 125
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFS 366
+Y+GNL +E+E++ LFS
Sbjct: 428 IYVGNLPPSTSEEELKVLFS 447
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 4.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 229 LKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
L + +LD I K N R+ +T+ +I NL PYGE
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGE 187
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 4.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
+++G L ++++E ++Q F P+G
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFG 321
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
+Y+GN+ VT +E+Q+ F+ G
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCG 79
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAE 387
+YI L DVT DEI+ +F G A+
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAK 138
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++GNL+ + TED++ F G+
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGD 391
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+RL++G + T +++ + F YG+
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQ 29
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 351 DFIFSDIISEVTNIQTAPTVELNFRLIYGR*IKQWPC*IFQLI 223
DFI + ++ +++ TA +V +RL G+ I+ + +LI
Sbjct: 466 DFIIEESLTNFSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLI 508
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 148 FAVDYVVVHFLRLVLDQIVCFLVSDLAH 65
FA+D+++ H + L I+C D+ H
Sbjct: 1709 FAMDFILSHCILFSLTPILCIPFIDIPH 1736
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 187 MKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNG 297
+ P+Q+ EM L N L+ L L++PA Q +++ G
Sbjct: 230 LMPVQKCEMHLLNILEQLQPDCLEVPA-GQRQLRCTG 265
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 95 CLFPCF*PGPHW 60
CLFP F PHW
Sbjct: 136 CLFPSFKETPHW 147
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 313 IGNLTNDVTEDEIQNLFS 366
+GNL N VT+++I+N S
Sbjct: 1631 LGNLLNLVTDEDIENAMS 1648
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
L++GNL + V+ + FS YG
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYG 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,466
Number of Sequences: 5004
Number of extensions: 21951
Number of successful extensions: 74
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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