Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B14
(390 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.063
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.14
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.14
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 0.58
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87) 29 1.4
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 1.8
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 1.8
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.8
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 1.8
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 28 2.4
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 2.4
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 3.1
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 28 3.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 27 4.1
SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 27 4.1
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 27 4.1
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_38413| Best HMM Match : Peptidase_C5 (HMM E-Value=0.26) 27 5.4
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 280 EVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
E KF GR RL++GNL D E+E++ +F YGE AE+
Sbjct: 46 ERKFTGRCRLFVGNLI-DCDEEEMKEMFKKYGEVAEV 81
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 33.5 bits (73), Expect = 0.063
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 238 LTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
LT L L + + + N R+Y+GNL DV E ++ ++F YG A++
Sbjct: 241 LTETTLSLMSSNMNRSNSND-CRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
P I+Q E + +R+YI ++ D+ ED+I+++F +G+
Sbjct: 186 PLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFEAFGK 224
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG 375
R+Y+G++ ++ E+ I+ F P+G
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFG 126
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 32.3 bits (70), Expect = 0.14
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
++LY+ +LT +V +D +Q +FS YG
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYG 1181
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAE 387
+Y+GNL DV + E+Q +FS YG E
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILE 643
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 31.1 bits (67), Expect = 0.33
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ LYI L D+ E+E++ LF P+G+
Sbjct: 113 ANLYISGLPKDMKEEEVEALFKPFGK 138
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
G +RLY+G+L ++TE ++ +F P+G
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFG 266
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
S L++GNL + TE + +L SPYG L
Sbjct: 113 SLLFVGNLPFEFTETQFGDLMSPYGNIERL 142
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L++ N+ + ED+I LFS YGE L
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNL 322
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 274 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
Q + R++L++G L + T + ++ F YGE ++
Sbjct: 5 QENTNNDPRAKLFVGGLNRETTNETLREYFEAYGELTDV 43
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGE 378
+++IG L N + ED+++ L S +GE
Sbjct: 674 KIFIGGLPNYLNEDQVKELLSSFGE 698
>SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)
Length = 488
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 106 LDQIVCFLVSDLAHIGPKTRPSADFGCSDF 17
L + V FL +LA+ PK P A F CS F
Sbjct: 244 LKEEVFFLKDELAYYRPKNTPKAVFSCSMF 273
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
R+Y+G L TED+++ F YG ++
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 244 GPLLDLPAIDQSEVKFNGRS-----RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GP D E + RS +++IGNL + V + ++ +FS YG E+
Sbjct: 333 GPAPDRSTFGSKEGRMAARSAPDSHQVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 277 SEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+E K R R L++ NL+ D E ++ F PYG+ A++
Sbjct: 310 NEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKV 348
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 190 KPIQREEMMLANKLKDLTGPLLDLPA 267
+P RE MMLA + + L P LDLP+
Sbjct: 268 RPTDRERMMLAQEEETLPFPSLDLPS 293
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 49 GSWGQCGPGQKQGNKQFGP 105
G WG+ PG+ Q N +F P
Sbjct: 621 GGWGRSRPGENQSNPRFSP 639
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGE 378
+L++G L+ + T++ ++ FS YGE
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGE 54
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
S K + +SRL I NL + TE ++ FS +GE +E
Sbjct: 239 SSPKGSKKSRLIIRNLAFNCTEAILKETFSAFGEVSE 275
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L++G ++ E++++ +FSP+G EL
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEEL 243
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 247 PLLDLPAIDQ---SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
P +D+ I + V+ + +L++G + E +++ +F PYG+ EL
Sbjct: 149 PRMDVKTITNGGTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYEL 199
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
+F G + LYI NL + + ++ ++ FSPYG
Sbjct: 208 RFQGVN-LYIKNLDDPIDDERLREEFSPYG 236
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 LANKL--KDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ANKL + + P+LD P D+S + LY+G L VTE ++++ F +GE
Sbjct: 281 VANKLLKQAQSMPMLDTPT-DRSI------TTLYVGGLEGKVTEQDLRDHFYQFGE 329
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
K N + +++G +TN ++E +++ F YG
Sbjct: 323 KVNPINTIWVGGVTNSLSEQQVERHFGRYG 352
>SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 353 WISSSVTSLVRLPIYKRLLPLNLTSD 276
WI S +TS+ L ++ L+ LNL S+
Sbjct: 19 WIDSQITSIKSLKLHSNLVTLNLHSN 44
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 217 LANKLKDLTGPLLDLPAIDQSEVKFNGRSR--LYIGNLTNDVTEDEIQNLFSPYG 375
L +L L GP + + F + ++IG L+ DVTE+ + LF+ +G
Sbjct: 494 LFRQLPSLQGPCIAFWVFQEVNEGFKMAASFPVWIGGLSEDVTENVLLELFNKFG 548
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ LYI NL + E ++N+FS YG+
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGK 204
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+S +Y+GNL +T ++ +F YG+
Sbjct: 9 KSTVYVGNLPYSLTNSDLHKVFERYGK 35
>SB_38413| Best HMM Match : Peptidase_C5 (HMM E-Value=0.26)
Length = 171
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 103 DQIVCFLVSDLAHIGPKTRPSAD 35
DQ+VC V DL G T P+AD
Sbjct: 141 DQVVCSFVHDLVCHGAGTAPNAD 163
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+YIGN+ ++ ++ EI+ F +G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFG 26
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
N +LYIGNL + E EI+ F +G
Sbjct: 6 NRGRKLYIGNLNFNSDEGEIEQAFEEFG 33
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L++G L D TE+ ++ F + E +E
Sbjct: 9 KLFVGGLNEDTTEETVRAYFKSFCEGSE 36
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+++YIG+L ++ ++ EI+N F YG
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYG 56
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+ +G + L + NLT T ++++ +F YG+ ++
Sbjct: 11 EIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDI 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,949,838
Number of Sequences: 59808
Number of extensions: 153607
Number of successful extensions: 356
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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