Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B14
(390 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 49 1e-06
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 49 1e-06
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 49 1e-06
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.054
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.094
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.094
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.17
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 31 0.29
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.50
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 30 0.50
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 30 0.50
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 0.50
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 0.50
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 0.50
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 30 0.67
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 30 0.67
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 30 0.67
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 30 0.67
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 0.88
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 0.88
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 29 0.88
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 1.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 1.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 1.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 1.5
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 1.5
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 1.5
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 1.5
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 28 2.7
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 28 2.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 2.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 2.7
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 28 2.7
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 2.7
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 27 6.2
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 27 6.2
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 26 8.2
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 26 8.2
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 26 8.2
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 26 8.2
AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical ... 26 8.2
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
KF GR RL++GNL N+V E E++ LFSP+G+ AE
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
KF GR RL++GNL N+V E E++ LFSP+G+ AE
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
KF GR RL++GNL N+V E E++ LFSP+G+ AE
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.054
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GN++ T+ ++++LFS YG+ AE+
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEV 266
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAE 387
+++G+L+ DV+ + +++ F+ +GE +E
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSE 163
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 32.7 bits (71), Expect = 0.094
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG 375
++Y+GNL DV E E++++F YG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYG 33
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 32.7 bits (71), Expect = 0.094
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG 375
++Y+GNL DV E E++++F YG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYG 33
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 31.9 bits (69), Expect = 0.17
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+R+YIG LT+ V+E +I++ F YG+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQ 28
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 31.9 bits (69), Expect = 0.17
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+R+YIG LT+ V+E +I++ F YG+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQ 28
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 31.9 bits (69), Expect = 0.17
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+R+YIG LT+ V+E +I++ F YG+
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQ 28
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 31.1 bits (67), Expect = 0.29
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
N + LY+G T DVTE + F P+G+
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGD 36
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.3 bits (65), Expect = 0.50
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
RL++ NL ED++Q LF YGE +E+
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEV 308
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L+IG L+ +EDE++ LF+ +GE E+
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEV 153
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L+IG L+ +EDE++ LF+ +GE E+
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEV 153
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 0.50
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.50
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.3 bits (65), Expect = 0.50
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 29.9 bits (64), Expect = 0.67
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +1
Query: 292 NGRSR--LYIGNLTNDVTEDEIQNLFSPYG 375
N RS+ +++GN++ DV+ED I+++FS G
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAG 42
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 29.9 bits (64), Expect = 0.67
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.9 bits (64), Expect = 0.67
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/42 (21%), Positives = 25/42 (59%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
P QS++ +++G+L+++V +++ F P+G+ ++
Sbjct: 122 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 163
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 29.9 bits (64), Expect = 0.67
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/42 (21%), Positives = 25/42 (59%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
P QS++ +++G+L+++V +++ F P+G+ ++
Sbjct: 90 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 131
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/42 (21%), Positives = 25/42 (59%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
P QS++ +++G+L+++V +++ F P+G+ ++
Sbjct: 9 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 50
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 29.5 bits (63), Expect = 0.88
Identities = 9/42 (21%), Positives = 25/42 (59%)
Frame = +1
Query: 262 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
P QS++ +++G+L+++V +++ F P+G+ ++
Sbjct: 19 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 29.5 bits (63), Expect = 0.88
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 298 RSRLYIGNLTNDV-TEDEIQNLFSPYGE 378
R+R++IGN+ + T D+I LF P+G+
Sbjct: 82 RARVFIGNIARAIITRDDIIELFRPFGK 109
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
S + + ++++IG L N +TED+++ L +G
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFG 315
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.7 bits (61), Expect = 1.5
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++++G LT++ T+D ++ +S +GE ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDI 52
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
P +P D++ + N RLY+ + D TED + F+ YG
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 1.5
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++++G LT++ T+D ++ +S +GE ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDI 52
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
P +P D++ + N RLY+ + D TED + F+ YG
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.7 bits (61), Expect = 1.5
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++++G LT++ T+D ++ +S +GE ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDI 52
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
P +P D++ + N RLY+ + D TED + F+ YG
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 138
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
S + + ++++IG L N +TED+++ L +G
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFG 315
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
S + + ++++IG L N +TED+++ L +G
Sbjct: 258 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFG 290
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 277 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
S + + ++++IG L N +TED+++ L +G
Sbjct: 261 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFG 293
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
S+L++GNL ++V ++++ +F P+ + E
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTE 31
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
S+L++GNL ++V ++++ +F P+ + E
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTE 31
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
P +P D++ + N RLY+ + D TED + F+ YG
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 100
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 247 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
P +P D++ + N RLY+ + D TED + F+ YG
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYG 100
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
K N ++++G ++ +V +++ + F+ YGE A+
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQ 57
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 286 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
K N ++++G ++ +V +++ + F+ YGE A+
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQ 57
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+G +Y+GN TE+E+ N FS G+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQ 30
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
R+YIG L N ++ ++++ F YG+ +++
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV 31
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYG 375
+S++++ N+ T+DE++ LFS +G
Sbjct: 682 KSKVFVRNVHFQATDDELKALFSKFG 707
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
S LY+ + +T E++++F P+G+
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQ 153
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++ N+ + TED++ + FS YG+
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGK 80
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 181 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 294
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 181 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 294
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 372
LPA S R +Y+GNL V +E+ LF+ Y
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMY 186
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 372
LPA S R +Y+GNL V +E+ LF+ Y
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMY 186
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG 375
++++G L + V E +I N FS YG
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYG 112
>AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical
protein Y73C8B.5 protein.
Length = 97
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 208 EMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 372
E + + L++LTG +L L + QSE F + + + ++ E++ LFS +
Sbjct: 3 ETICIDALQELTGAMLSLRGLAQSEENFKKVFQEFDEDGNGFISVAELEPLFSNF 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,491,787
Number of Sequences: 27780
Number of extensions: 122965
Number of successful extensions: 382
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -