Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B14
(390 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.022
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.022
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.029
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.029
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.029
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 33 0.090
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.090
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.090
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.090
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 32 0.12
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 32 0.12
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 32 0.12
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 32 0.12
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 32 0.12
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.12
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.12
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 31 0.21
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.21
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.21
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.21
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.21
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.27
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.27
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 31 0.36
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 31 0.36
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 30 0.48
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 30 0.48
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 30 0.48
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 0.48
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 30 0.48
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 0.48
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 0.48
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 30 0.63
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 30 0.63
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 0.63
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 0.84
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 0.84
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 0.84
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 0.84
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 0.84
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 0.84
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 0.84
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 0.84
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 1.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 1.1
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 1.1
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 1.1
At2g25460.1 68415.m03049 expressed protein 29 1.1
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 1.5
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 1.5
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 1.5
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 1.5
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 1.9
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 28 1.9
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 28 1.9
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 28 1.9
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 28 2.6
At5g27060.1 68418.m03229 disease resistance family protein conta... 28 2.6
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote... 28 2.6
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 28 2.6
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 28 2.6
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 27 3.4
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 3.4
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 27 3.4
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 3.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 27 3.4
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 27 3.4
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 27 3.4
At1g68530.2 68414.m07829 very-long-chain fatty acid condensing e... 27 3.4
At1g68530.1 68414.m07828 very-long-chain fatty acid condensing e... 27 3.4
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 3.4
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 27 3.4
At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase, ... 27 4.5
At4g28560.1 68417.m04085 leucine-rich repeat family protein (fra... 27 4.5
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 27 4.5
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote... 27 4.5
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 27 4.5
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 4.5
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 4.5
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 4.5
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 27 4.5
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 27 4.5
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 27 4.5
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 5.9
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 27 5.9
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 27 5.9
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 27 5.9
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 5.9
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 27 5.9
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 27 5.9
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 27 5.9
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 5.9
At5g51300.2 68418.m06360 splicing factor-related contains simila... 26 7.8
At5g51300.1 68418.m06359 splicing factor-related contains simila... 26 7.8
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 26 7.8
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 26 7.8
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 26 7.8
At5g23395.1 68418.m02738 expressed protein 26 7.8
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 26 7.8
At4g22430.1 68417.m03241 hypothetical protein 26 7.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 26 7.8
At3g55190.1 68416.m06130 esterase/lipase/thioesterase family pro... 26 7.8
At2g47310.1 68415.m05906 flowering time control protein-related ... 26 7.8
At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote... 26 7.8
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 256 DLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L +D + N +L++G L +V+E E+Q+LFS YG +L
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDL 138
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.022
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E E+++LFS YG ++
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQI 36
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.022
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E E+++LFS YG ++
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQI 36
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.029
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E E+++LFS YG ++
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQI 36
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.3 bits (75), Expect = 0.029
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E E+++LFS YG ++
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQI 36
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.029
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E E+++LFS YG ++
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQI 36
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 32.7 bits (71), Expect = 0.090
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ E EI+++F YG ++
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDI 36
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.090
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
N SR+++G L+ DVTE ++++ F YG+ E
Sbjct: 9 NLESRIFVGGLSWDVTERQLESTFDRYGKITE 40
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.090
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
N SR+++G L+ DVTE ++++ F YG+ E
Sbjct: 9 NLESRIFVGGLSWDVTERQLESTFDRYGKITE 40
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 32.7 bits (71), Expect = 0.090
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L++G L +V+E E+Q+LFS YG +L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDL 129
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+R+YI NL DVT DE+++LF G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQ 305
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+R+YI NL DVT DE+++LF G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQ 305
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 32.3 bits (70), Expect = 0.12
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 214 MLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
ML N + GP L D + K + +Y+ NL T+D+++N F YG+
Sbjct: 1 MLLNDKQVYVGPFLRRQERDSTANKTKF-TNVYVKNLAESTTDDDLKNAFGEYGK 54
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
S LY+ NL +++++++ +FSP+G
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFG 156
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L++G L +V+E E+Q+LFS YG +L
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDL 135
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+L++G L +V+E E+Q+LFS YG +L
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDL 135
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFS 366
+G +R+YIGNL D TE +I+ LFS
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFS 283
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
G RLY+GNL +++ED+++ +F +G S EL
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFG-SVEL 313
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 DLPAIDQSEVKF-NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
DL + + F + ++Y+GNL VT++ ++NLFS G+
Sbjct: 161 DLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGK 202
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.5 bits (68), Expect = 0.21
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
++++G + + VTEDE+++ F+ YG E
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVE 137
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.5 bits (68), Expect = 0.21
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
++++G + + VTEDE+++ F+ YG E
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVE 137
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.5 bits (68), Expect = 0.21
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++G L VT+D ++N+FS YGE
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGE 286
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.5 bits (68), Expect = 0.21
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++G L VT+D ++N+FS YGE
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGE 286
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.1 bits (67), Expect = 0.27
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 238 LTGPLLDLP-AIDQSEVKFNG-RSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L G LD+ +I + K N L++ NL + ++ +E+ +FS YGE E+
Sbjct: 272 LRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREV 324
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.27
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 256 DLPAIDQSE--VKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
DL D++ K+ + +Y+G + D+TE ++ +FS YGE ++
Sbjct: 19 DLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDV 65
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 30.7 bits (66), Expect = 0.36
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
S+L+IG L+ V E +++ FS +GE AE+
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEV 70
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 30.7 bits (66), Expect = 0.36
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
S LY+ NL VT+D+++ F+P+G
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFG 351
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GR++ +++G L + +TE+E +N F +G A++
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADV 139
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ +++ FS YG+ E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GR++ +++G L + +TE+E +N F +G A++
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADV 139
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ +++ FS YG+ E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GR++ +++G L + +TE+E +N F +G A++
Sbjct: 107 GRTKKIFVGGLPSSITEEEFKNYFDQFGTIADV 139
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ +++ FS YG+ E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVE 34
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+R+Y+GNL+ T+D ++ FS YG
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYG 27
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.3 bits (65), Expect = 0.48
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 292 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ S +++G L DVTE+++ FS +GE
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 274 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
QS V NG + L++G L T+ EI+++ S YG E+
Sbjct: 193 QSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEI 231
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 30.3 bits (65), Expect = 0.48
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+Y+GNL D+ + E+++LF YG ++
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDI 36
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.9 bits (64), Expect = 0.63
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 253 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
L P++ Q+ ++ S+L+IG + + ED ++ F+ YGE
Sbjct: 25 LSSPSLFQA-IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGE 65
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 0.63
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
R+Y+GNL DV ++ LFS +G+ E
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVE 272
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 29.9 bits (64), Expect = 0.63
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ +Y+ NL ++T+DE++ F YG+
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGD 250
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
S LY+ NL + V +++++ +FS YG
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYG 352
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++G L +VT+DE++++F +GE
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGE 285
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.5 bits (63), Expect = 0.84
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 289 FNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
++ R+Y+GNL DV ++ LFS +G+
Sbjct: 203 YDAAFRIYVGNLPWDVDSGRLERLFSEHGK 232
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.5 bits (63), Expect = 0.84
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
+Y+G L D+TE+ ++ +FS YG
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYG 31
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.5 bits (63), Expect = 0.84
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+Y+GNL VTE E+++ F +G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFG 26
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.5 bits (63), Expect = 0.84
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
G +RLY+G L++ +++ LFS YG
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYG 35
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 0.84
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+S LY+ NL +T +I LFS +G+ A +
Sbjct: 56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARV 86
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 0.84
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
G +RLY+G L++ +++ LFS YG
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYG 35
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.5 bits (63), Expect = 0.84
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
SR+Y+GNL VTE E+++ F +G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFG 26
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+RLY+GNL+ V + ++NLF+ G+ E
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVE 277
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+RLY+GNL+ V + ++NLF+ G+ E
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVE 285
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+P + SE N + L I N+ V+ DE+ LF YGE E+
Sbjct: 257 IPKENPSEKDMN-QGTLVIFNVDTTVSNDELLQLFGAYGEIREI 299
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L++ N+ + V + E+ LF P+GE L
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSL 214
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+P + SE N + L I N+ V+ DE+ LF YGE E+
Sbjct: 270 IPKENPSEKDMN-QGTLVIFNVDTTVSNDELLQLFGAYGEIREI 312
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L++ N+ + V + E+ LF P+GE L
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSL 227
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 202 FELVSCCLVHPWNLSYYYF 146
FE V CC+V PWNLS+ F
Sbjct: 83 FERV-CCIVGPWNLSFNVF 100
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
++L++ N+ + T+ E++ LFSP+G+
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQ 694
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
RL++ NL TE+E+ FS +G+ +E+
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEV 290
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
++RL+IGN+ + TEDE + + G E
Sbjct: 195 KNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+R+Y+GNL VTE E+++ F +G
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFG 26
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+R+Y+GNL VTE E+++ F +G
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFG 26
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 28.3 bits (60), Expect = 1.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++++G L + +TE E +N F +G A++
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADV 151
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ +Q F YG+ E
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVE 43
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 253 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L P I S + S++ + NL +ED ++ FS +GE AE+
Sbjct: 24 LRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEV 69
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L+I NL DVT++E++ F+ +GE L
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESL 590
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 259 LPAIDQ-SEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAE 387
LP D+ +++K ++R +++G L + EDE++N F YG+ E
Sbjct: 141 LPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 280 EVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 375
E G RL++G L V D++ +FSP G
Sbjct: 3 EKSSGGGVRLHVGGLGESVGRDDLLKIFSPMG 34
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 166 SMGGQDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLT 327
S+GG ++ + + ++ G L +L +D S F+G+ +IGNL+
Sbjct: 212 SIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLS 265
>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21, Oryza sativa,
PIR:A57676
Length = 1031
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 169 MGGQDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLT 327
+G +++ + E ML+ +L G LL+L +D +G Y GN+T
Sbjct: 389 IGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMT 441
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 259 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+P + SE N + L + NL V+ +++N+F YGE E+
Sbjct: 209 IPKDNPSEKDVN-QGTLVVFNLAPSVSNRDLENIFGVYGEIKEI 251
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+ +Y+ NL VT+D + LFS YG
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYG 226
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYG 375
G + LY+ NL + +T ++ +F P+G
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFG 136
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 232 KDLTGPLLDLPAIDQSEVKFNGR-SRLYIGNLTNDVTEDEIQNLFSPYGE 378
KD +L D K N R S LY+ NL+ + E ++ +F YG+
Sbjct: 280 KDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQ 329
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
LYI NL D+T++ ++ LF +G+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGK 59
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
++LYI NL V+ ++I+ LFS G+
Sbjct: 108 TKLYISNLDYGVSNEDIKELFSEVGD 133
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.5 bits (58), Expect = 3.4
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++G + VTED+++++F +GE
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGE 303
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
LYI NL D+T++ ++ LF +G+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGK 293
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ ++ FS +GE E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIE 34
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GR+R +++G L + VTE + + F +G + ++
Sbjct: 105 GRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDV 137
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ D E+ ++ FS +GE E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIE 34
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 295 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
GR+R +++G L + VTE + + F +G + ++
Sbjct: 105 GRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDV 137
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 178 QDNMK-PIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQ 354
+D+ K I++ + N + GP L + + K + +Y+ NL+ T+DE++
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF-TNVYVKNLSEATTDDELK 242
Query: 355 NLFSPYG 375
F YG
Sbjct: 243 TTFGQYG 249
>At1g68530.2 68414.m07829 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 377
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 163 LSYYYFAVDYVVVHFLRLVLDQIVCFLVSDLAHIGPK 53
L Y Y+V HFL +L I+ + +L +GP+
Sbjct: 15 LKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPE 51
>At1g68530.1 68414.m07828 very-long-chain fatty acid condensing
enzyme (CUT1) identical to very-long-chain fatty acid
condensing enzyme (CUT1) GB:AF129511 (required for
cuticular wax biosynthesis and pollen fertility:
Millar,A.A., et al., Plant Cell (1999))
Length = 497
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 163 LSYYYFAVDYVVVHFLRLVLDQIVCFLVSDLAHIGPK 53
L Y Y+V HFL +L I+ + +L +GP+
Sbjct: 15 LKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPE 51
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 27.5 bits (58), Expect = 3.4
Identities = 7/29 (24%), Positives = 21/29 (72%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++++G L+++ TE+E ++ F +G + ++
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDV 149
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
R +L++G + + +E+ ++ FS YG E
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSRYGAVLE 34
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 247 PLLDLPAID-QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESA 384
P ++LPA +S+V L + +L + + D + LFS YG SA
Sbjct: 9 PAVNLPATQFESQVTEPFGVTLLVRHLPDGIPHDIVSRLFSQYGASA 55
>At4g38460.1 68417.m05434 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative 65% similar to
geranylgeranyl pyrophosphate synthase [GI:413730];
Length = 326
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 214 MLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNL 360
M A + DL G L + + + G G L TEDE+Q+L
Sbjct: 198 MAAGQYVDLEGGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSL 246
>At4g28560.1 68417.m04085 leucine-rich repeat family protein
(fragment) contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611;
Length = 450
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 184 NMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLF 363
N+K + + D G L +L +D S +F G +GNL V D N F
Sbjct: 227 NLKVLDFSHNFINGNAPDSIGDLTELLKLDLSFNEFTGEVPSGVGNLKKLVFLDLSYNRF 286
Query: 364 SPYG 375
+G
Sbjct: 287 GNFG 290
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYG 375
RLY+GNL +T E+ +F G
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAG 140
>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1010
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 169 MGGQDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDE 348
+G N++ + ++ ML+ L G LL+L + + +G +IGN+T T D
Sbjct: 381 IGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDL 440
Query: 349 IQNLF 363
N F
Sbjct: 441 SNNGF 445
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 295 GRSRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
G L+ GNL+ + +I+N F GE ++
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDV 413
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+I L D T + +++LFS YG+ E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEE 103
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+I L D T + +++LFS YG+ E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEE 103
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGESAEL 390
L++G L++ TED ++ + S YG L
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNL 93
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+R+Y+GNL+ V + +++LFS G+ E
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVE 232
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 292 NGRSRLYIGNLTND-VTEDEIQNLFSPYG 375
N R + + NL D + ED++ NLFS YG
Sbjct: 242 NDRCTVLVSNLNADSIDEDKLFNLFSLYG 270
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYG 375
+ LY+ NL + V +++++ +FS YG
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYG 356
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+YIGN++ TE+++ LFS GE
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGE 59
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 26.6 bits (56), Expect = 5.9
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 241 TGPLLDLPAIDQSEVKFNGRSRLYIGNLTND-VTEDEIQNLFSPYGE 378
TGPL P DQS +K LYI L N V E +I++ F PYGE
Sbjct: 65 TGPLK--PPEDQS-IK-----TLYIRRLINSSVLEQDIRDHFCPYGE 103
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
++L++ L+ T+ ++ LFSP+G+ E
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKE 35
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+++++GNLT T D+++ F +G+
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQ 37
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 172 GGQDNMKPIQRE--EMMLANKLKDLTGPLLDLPAIDQSEVKFNGRS---RLYIGNLTNDV 336
G ++ +K Q++ M A +L + GP+ P + ++ FN + ++Y+ N++ D+
Sbjct: 181 GARNALKQPQKKIGTRMTACQLASI-GPVQGNPVVAPAQ-HFNPENVQRKIYVSNVSADI 238
Query: 337 TEDEIQNLFSPYGESAE 387
++ FS +GE E
Sbjct: 239 DPQKLLEFFSRFGEIEE 255
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
+ LY+ NL DV+ED ++ F+ +G+ L
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSL 230
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYGE 378
+++G L + VT+++++ FS +GE
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGE 331
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGE 378
++ LY+G L ++V E + F P+G+
Sbjct: 12 KNTLYVGGLADEVNESILHAAFIPFGD 38
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 217 LANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 378
+A KL G + L + D +K LY+G L + + E +I++ F +GE
Sbjct: 205 VAMKLLGKAGEMGTLESPDDESIK-----TLYVGGLNSRILEQDIRDQFYAHGE 253
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ LYIG L + +D + NLFS +GE
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGE 505
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGE 378
+ LYIG L + +D + NLFS +GE
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGE 505
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ + +ED +++ F +GE E
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE 34
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+L+IG ++ + +ED +++ F +GE E
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLE 34
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 304 RLYIGNLTNDVTEDEIQNLFSPYGESAE 387
++++G + + V +DE + F +GE E
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKE 158
>At5g23395.1 68418.m02738 expressed protein
Length = 162
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 18 KSEQPKSAEGRVLGPMWARSETR 86
K EQP + R++ P+WA+ R
Sbjct: 134 KEEQPPVQDHRIIPPLWAKDPPR 156
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 307 LYIGNLTNDVTEDEIQNLFSPYG 375
LY+ NL ++T +E+ ++F YG
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYG 43
>At4g22430.1 68417.m03241 hypothetical protein
Length = 348
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 365 ENKFWISSSVTSLVRLPIYKRLLPLNLTSD*SMAGKSSN 249
E FWI V VRLP + + LN T S G S N
Sbjct: 121 ETGFWIHKEVVCPVRLPNFYDPISLNGTLYFSQRGDSYN 159
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/30 (26%), Positives = 21/30 (70%)
Frame = +1
Query: 298 RSRLYIGNLTNDVTEDEIQNLFSPYGESAE 387
+ +L++G ++ + ED+++ F+ YGE ++
Sbjct: 5 QGKLFVGGISWETDEDKLREHFTNYGEVSQ 34
>At3g55190.1 68416.m06130 esterase/lipase/thioesterase family
protein similar to monoglyceride lipase from [Homo
sapiens] GI:14594904, [Mus musculus] GI:2632162;
contains Interpro entry IPR000379
Length = 319
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 187 MKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVT 339
M + R + L N+L ++T P + L D G LY L+ND T
Sbjct: 211 MSELFRISLDLENRLNEVTMPFIVLHGEDDKVTDKGGSKLLYEVALSNDKT 261
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 301 SRLYIGNLTNDVTEDEIQNLFSPYGESAEL 390
++LY+ ++ TE +I+ +F YG E+
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
[Pinus sylvestris] gi|12054894|emb|CAC20842; contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 1124
Score = 26.2 bits (55), Expect = 7.8
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 184 NMKPIQREEMMLANKLKDLT---GPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEI- 351
N K +QR ++ + + L G L L + SE +F+G IGNLT+ +TE ++
Sbjct: 563 NCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTH-LTELQMG 621
Query: 352 QNLFS 366
NLFS
Sbjct: 622 GNLFS 626
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,827
Number of Sequences: 28952
Number of extensions: 117184
Number of successful extensions: 391
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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