Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B13
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    43   7e-06
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    40   9e-05
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    36   0.001
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    29   0.16 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   0.49 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   0.65 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   1.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.6  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   2.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    24   3.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   4.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    24   4.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 43.2 bits (97), Expect = 7e-06
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +2

Query: 20  LGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIELI 184
           +G   +I+GWD GV  M  GE   LT  P+Y Y            STL F++EL+
Sbjct: 51  IGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 39.5 bits (88), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +2

Query: 14  FELGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIELI 184
           F LG+  VI+GWD+GVA M++G    +T     AY            STL FE++L+
Sbjct: 303 FILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAY-GNQSIPGIPKNSTLVFEVKLV 358


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 14  FELGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIELI 184
           F LG E VIKGWD+G+  M+ G   T+      AY            S L F+++L+
Sbjct: 304 FNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAY-GSKRLPGIPANSDLVFDVKLL 359


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 184 YQFYLKFQCRFRWYCWRFSTRPIGIFWGTSQCAHFTLFHGCY 59
           + +Y   QC  +   WRFS R         +C H  + H CY
Sbjct: 546 FAYYYCLQCECKSLHWRFSDRS-----NCDECGHKPMSHTCY 582


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 178 FYLKFQCR-FRWYCWRFST 125
           F ++ QCR F ++CWRF +
Sbjct: 62  FCIRIQCRDFMFFCWRFQS 80


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 145 YCWRFSTRPIGIFW 104
           +CWR  T P+G  W
Sbjct: 363 FCWRHGTNPVGTSW 376


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 175 YLKFQCRFRWYCWRFSTRPIGIFWGTS 95
           YLKF C      +R S RP G+  G S
Sbjct: 32  YLKFDCDHNDKNYRASNRPFGLSTGLS 58


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 55  RSSNHEKG*SVHIDLCPRICLWA 123
           R  NHE+     IDLCP   LWA
Sbjct: 116 RMYNHEQL-GKSIDLCPNASLWA 137


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +1

Query: 13  IRIGERNCNKGMGHRSSNHE--KG*S-VHIDLCPRICLWAWWKTSNNTT*IYIEI*DRTD 183
           IRIGE+N +  +   S ++   KG S VH+     +  W  W T +  T  +IE+  +T+
Sbjct: 132 IRIGEKNNHYRIVFSSVDNSLVKGPSNVHVYDHLFVRHWDRWNTGSRNTLYFIELDKKTE 191

Query: 184 RLES*RFKSE 213
                   SE
Sbjct: 192 NSNYFEISSE 201


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 2   HEVEFELGKETVIKGWDI-GVATMKK 76
           HEV FEL     I+  DI G AT +K
Sbjct: 496 HEVRFELRSSAAIREGDIQGFATYEK 521


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 151 RWYCWRFSTRPIGIFWGTS 95
           R + W  S +PI  FWG S
Sbjct: 689 RNWIWNHSPKPIQKFWGKS 707


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   EVEFELGKETVIKGWDIGVATMKKGEVCTL 94
           E+   +    ++KG D+G  T+   E CTL
Sbjct: 203 EIPVNITLYPLLKGLDVGKVTLVLKEYCTL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,301
Number of Sequences: 5004
Number of extensions: 18149
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)