Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B13
         (278 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       42   1e-04
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.14 
SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)                    31   0.19 
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   26   5.4  
SB_57008| Best HMM Match : Sushi (HMM E-Value=0.016)                   25   9.4  
SB_35034| Best HMM Match : ENTH (HMM E-Value=0)                        25   9.4  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 11  EFELGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIELID 187
           +F LGK  VI+GW+ G+  M  GE   LT  P  AY            +TL  ++EL++
Sbjct: 73  DFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVE 131


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  EFELGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXX----XXXXXXXSTLKFEIE 178
           EF +G  TVIKG++ GV  M  G+   +   P  AY                +TL + +E
Sbjct: 149 EFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLE 208

Query: 179 LIDWKVEDLSPNKNKGILRHIIEMG 253
           L D +     P  +  +  H+ E G
Sbjct: 209 LFDVR----KPPPHSDMFSHMDENG 229


>SB_55745| Best HMM Match : FKBP_C (HMM E-Value=5.9)
          Length = 110

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = +2

Query: 44  GWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIEL---IDWKVE-DLSP 211
           G DIGV+TM+KGE+       EY +            +T+ +E+EL   +D   E DL  
Sbjct: 5   GLDIGVSTMRKGELSRFLFDKEYVF-KDLGCEPRVPGATVMWEVELLSFVDHGPEGDLES 63

Query: 212 N-----KNKGILRHIIEMGTGD 262
           N     + K    H++ +  GD
Sbjct: 64  NFPEGERRKASFEHLMAVANGD 85


>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 193 FPVYQFYLKFQCRFRWYCWR 134
           +P+Y ++    C F WYC R
Sbjct: 342 YPIYTYHHLESCLFPWYCKR 361


>SB_16982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 90  VHTSPFFMVATPMSHPFITVSFPNSNSTSC 1
           + T+P+ +V  P S   +T ++PN    +C
Sbjct: 128 IETNPYVIVVFPASRERLTQTYPNIVDVTC 157


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 16   RIGERNCNKGMGHRSSNHEKG*SVHIDLCPR 108
            R G+R+    + H   +H +G S+H+D+ PR
Sbjct: 2055 RRGQRSSGSSVFHARVHHVEGASIHVDI-PR 2084


>SB_57008| Best HMM Match : Sushi (HMM E-Value=0.016)
          Length = 88

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 62  ATMKKGEVCTLTCAPEY 112
           A M+ G VCT +C P Y
Sbjct: 45  ARMRAGTVCTFSCPPFY 61


>SB_35034| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 455

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 157 RFRWYCWRFSTRPIGIFWGTSQCA 86
           + R Y W  ST P+   WG  Q A
Sbjct: 242 KMRDYAWLSSTPPVADPWGAPQAA 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,500
Number of Sequences: 59808
Number of extensions: 140176
Number of successful extensions: 250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)