Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B13
         (278 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578802-1|AAT07307.1|  108|Anopheles gambiae FK506-binding prot...    52   5e-09
AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse t...    22   5.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    21   8.7  

>AY578802-1|AAT07307.1|  108|Anopheles gambiae FK506-binding protein
           protein.
          Length = 108

 Score = 51.6 bits (118), Expect = 5e-09
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +2

Query: 11  EFELGKETVIKGWDIGVATMKKGEVCTLTCAPEYAYXXXXXXXXXXXXSTLKFEIELI 184
           +F +GK  VI+GWD GVA M  G+   L C+P+YAY            + L F++EL+
Sbjct: 48  KFSVGKGEVIRGWDEGVAQMSVGQRAKLVCSPDYAYGSRGHPGVIPPNARLTFDVELL 105


>AJ970243-1|CAI96715.1|  129|Anopheles gambiae putative reverse
          transcriptase protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 79 TLFHGCYSYVPSLYYSFFPQ 20
          +L + C SY+ +  + FFP+
Sbjct: 22 SLMYHCRSYISTHQHGFFPR 41


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 76  LFHGCYSYVPSLYYSFFPQ 20
           L H C SY+    + F P+
Sbjct: 638 LLHACRSYLSPYQHGFVPK 656


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,176
Number of Sequences: 2352
Number of extensions: 4620
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 16604898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)