Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B12
         (301 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593...    27   3.6  

>03_02_0149 +
           5933134-5933207,5935039-5935267,5935370-5935468,
           5935582-5935616,5935694-5935769,5936552-5936662,
           5937001-5937087,5937302-5937395,5937489-5937606,
           5938047-5938542,5939263-5939298,5940047-5940578,
           5940668-5940792
          Length = 703

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   TRSRYKSTNGQTDG*GHLY 59
           TR RY   NGQTDG   LY
Sbjct: 145 TRGRYHPPNGQTDGEKPLY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,928,832
Number of Sequences: 37544
Number of extensions: 56756
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)