Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B12
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                28   1.6  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.5  

>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  HLYSVRIDHYHVHYIFIIVDLIVYV 125
           H + V  DH+H HY  I++ +I+ +
Sbjct: 244 HYHHVHYDHHHHHYHDIVIIIIIII 268


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +3

Query: 75  HYHVHYIFIIVDLIVYVXXXXXXXXXXXXX---XXXXXXXXYLNKYFCFNEIIVL 230
           HYH H+  II+ +IV V                        +   Y C + II++
Sbjct: 32  HYHCHHYIIIIIIIVVVITTTIITSSSSSSPLPLSSSHHHHHRRHYLCHHHIIII 86


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 60  SVRIDHYHVHYIFIIVDLIVYV 125
           S R  H+H H+I II+++I+ +
Sbjct: 195 SNRYHHHHHHHIIIIINIIIII 216


>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 236 ITQNYYLIETKIFIEIYEYFL 174
           +T NYY I  K+F+ + +Y L
Sbjct: 94  LTFNYYFINFKVFVNVVKYKL 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,789
Number of Sequences: 59808
Number of extensions: 73282
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)