Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B11
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    35   0.004
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      34   0.006
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.043
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    31   0.057
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    30   0.075
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   0.23 
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.40 
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   1.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   2.1  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   2.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   2.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    24   5.0  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    24   5.0  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    24   6.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    24   6.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    23   8.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   8.7  

>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
           V NL++ TT E +  +F +CGE+  I +  DR+T+
Sbjct: 36  VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTK 70


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 33.9 bits (74), Expect = 0.006
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
           S+ V N+ Y  TPE+L+  F  CG V  + I  D++T
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFT 92


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.1 bits (67), Expect = 0.043
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 239
           V NL++  T +DL   F  CG++  I +P D
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTD 400


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 111 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
           P  R DG   + +  L + TT + LR  FE+ GEV D  + RD  T  S
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRS 203


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.3 bits (65), Expect = 0.075
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
           L V N+ +  T ED++ +FE  G++  +++ RD   R
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR 378



 Score = 26.2 bits (55), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
           V  L  R T  +L   FE+ G V D  I RD+ +  S
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRS 280


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 153 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
           NLTY    +DL+ +F   G++  +++P D+ T
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKT 360


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 242
           D  V L V NL   ++ E L+  F+R G+V  + IP D+
Sbjct: 89  DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDK 127


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 246 CNDLWVCRYHRPLRIFQIRDGDLQESSDKLN 154
           CND+   RYH    +F+++D  L    D L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLSFQKDCLH 671


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 116  RRPSVTHFDY*YRSSQNTKNSTSDERTNK 30
            R+PS+ H    Y +  +   STSDE T++
Sbjct: 963  RKPSLLHTSKSYSNPDDKNTSTSDEDTSE 991


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
           T  EDL  +F R G++    + RD+ T +S
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDS 284


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 282 RILRKQNLYFLVCNDLWVCRYHRPLRIFQIRDGDLQE 172
           R+    NL F  CN  WV      L I+Q +  DL++
Sbjct: 441 RLFETYNLIF-PCNQYWVFNLEFLLGIYQCKTFDLED 476


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 189 DGDLQESSDKLNCPLLVKPCRQYAAAAFRNSF 94
           DGD + S D L  P ++KP   +   A  +SF
Sbjct: 323 DGDSESSEDDLAQPGIMKPDITFFGEALPDSF 354


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 231 VCRYHRPLRIFQIRDGDLQESSDKLNCPLLVK 136
           V R+HRPL +FQ  +       + +  P + K
Sbjct: 87  VLRFHRPLHLFQTSECHELIQEESVKSPSITK 118


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 222 YHRPLRIFQIRDGDLQ 175
           YHR L IF  RDGD Q
Sbjct: 66  YHRILYIFINRDGDSQ 81


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 242
           ++ + NL  + T   L  +  + G V +I+IPRDR
Sbjct: 12  TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDR 46


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 272 ESKTSTFSCVTISGYVDITD 213
           + KT  F C+   G+VD  D
Sbjct: 205 KGKTFAFQCIDTPGHVDFVD 224


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 236
           L V N+ ++   +D+   F   G+V  + IP+
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,889
Number of Sequences: 5004
Number of extensions: 19720
Number of successful extensions: 69
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)