Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B11
(322 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 5e-18
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 5e-04
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 31 0.16
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.21
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.21
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 31 0.28
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 29 0.64
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 0.84
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 0.84
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.1
SB_44765| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 1.5
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 28 1.5
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 27 2.6
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 27 3.4
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 27 4.5
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 26 5.9
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.9
SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.9
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 86.2 bits (204), Expect = 5e-18
Identities = 40/71 (56%), Positives = 49/71 (69%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T ES
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 288 XXXXEEALDSL 320
E+A+D +
Sbjct: 67 KRDAEDAMDCM 77
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V NL Y T DL +VFER G+V + I RD+ TRES
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRES 50
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.5 bits (68), Expect = 0.16
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 165 RTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
R ED+R FE+ G + D+++ +D+ T+E+
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKATKEN 63
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 236
RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDI 224
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
Score = 29.5 bits (63), Expect = 0.64
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+L VDNL+ T D+ R F G+V ++I DR T +S
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKS 359
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
D S+ + NL + E LR +F CG V + + RDR T
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKT 93
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 135 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 242
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
D + L V L+Y TT E L+ F + GE+ + I D T
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALT 66
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 236
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.1 bits (62), Expect = 0.84
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 254
L V L+ TT DLR VFE+ G V I I D +E
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 174 PEDLRRVFERCGEVGDIYIPRDRYTRES 257
P DL F + G+V D+ I DR +R S
Sbjct: 159 PRDLEEFFSKVGQVSDVRIISDRNSRRS 186
>SB_44765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 249 VCNDLWVCRYHRPLRIFQIRDGDLQESSD 163
V LW C Y+ P+R+ QIR + SD
Sbjct: 14 VSTSLWPCDYYHPIRLQQIRGVTVVNLSD 42
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 105 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
G R V L V + +DLR +FE G++ ++ I +D+YT
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYT 207
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTRES 257
EDLR FE G++ + I RD TRE+
Sbjct: 67 EDLRSKFESFGDIEYVQIVRDHKTREN 93
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
L V + Y + + LR+ F + GE+ + + +DR T++S
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKS 50
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 90 IKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 209
+K+S+ R P+I S V T TTPE+LR++ E G
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 87 IIKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
I+ + YG + L V LT + + E LR+ FE+ GE+ + + RD T+ S
Sbjct: 95 ILDIDYGTS--HFSSTLELSVIPLT-QASAEGLRQHFEKFGELKECVVMRDPVTKRS 148
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 102 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 215
YG PP R + S+ V+NL+ RT+ +DL+ F + G+V
Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKV 824
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
SL V NL+Y TT + L FE C I+ DR + ES
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGES 326
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
TT EDL +F R G + + RD+ T ES
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGES 160
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -2
Query: 270 KQNLYFLVCNDLWVCRYHRPLRIFQIRDGDLQESSDKLNCPLLVK 136
+ N+ FL+ + ++C RP + F+ + ++++ C L VK
Sbjct: 128 RDNVKFLLEHRCYICPEQRPFQTFKKLEDHMRQTHQLYFCALCVK 172
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -2
Query: 270 KQNLYFLVCNDLWVCRYHRPLRIFQIRDGDLQESSDKLNCPLLVK 136
+ N+ FL+ + ++C RP + F+ + ++++ C L VK
Sbjct: 95 RDNVKFLLEHRCYICPEQRPFQTFKKLEDHMRQTHQLYFCALCVK 139
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 200 KMRRGR*YLHTQRSLHTRK 256
KMR+ R YL T++SLH K
Sbjct: 2874 KMRQRRIYLQTRKSLHCHK 2892
>SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 111 PPPRIDGMVSLKVDNLTY---RTTPEDLRRVFERCGEVGD 221
PPP S D LTY RT+P ++ + E GEVGD
Sbjct: 15 PPPVFRDPQSSIQDKLTYPTSRTSPFEVCCIDEDGGEVGD 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,746
Number of Sequences: 59808
Number of extensions: 144819
Number of successful extensions: 341
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -