Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B11
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 81 2e-16
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 81 2e-16
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 34 0.020
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 33 0.061
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 33 0.061
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.24
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.24
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 30 0.32
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.43
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 29 0.75
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 29 0.75
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 29 0.75
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 0.99
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 0.99
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 28 1.7
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 27 3.0
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 27 4.0
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 27 4.0
Z72502-5|CAA96590.1| 193|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 26 7.0
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 26 7.0
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 25 9.2
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 25 9.2
U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 25 9.2
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 25 9.2
U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical pr... 25 9.2
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 25 9.2
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 25 9.2
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 25 9.2
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 25 9.2
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 25 9.2
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Query: 288 XXXXEEALD 314
E ALD
Sbjct: 70 RRDAEHALD 78
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Query: 288 XXXXEEALD 314
E ALD
Sbjct: 70 RRDAEHALD 78
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 34.3 bits (75), Expect = 0.020
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEAL 311
S+ + N+ + +T E++ F+ CG++ IP+D++T++ E AL
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 113
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 32.7 bits (71), Expect = 0.061
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEAL 311
S+ + N+ + +T E++ F+ CG + IP+D++T++ E AL
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 119
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 32.7 bits (71), Expect = 0.061
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
S+ V N+ +++T ++ F CG+V + IP+D++T
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFT 83
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 230
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 230
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
S+ V N+ Y T E++ + F CG V + I DR++
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFS 115
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 153 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
NL Y T +DL+ +F++ GEV ++ + D+ T
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKT 316
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
TT EDL +F R G++ + I RDR + +S
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDS 281
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
TT EDL +F R G++ + I RDR + +S
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDS 281
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
TT EDL +F R G++ + I RDR + +S
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDS 212
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 28.7 bits (61), Expect = 0.99
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 114 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 28.7 bits (61), Expect = 0.99
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 114 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L Y T+ + L FE+ G++ + + DR T++S
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKS 75
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
+L V NL+Y T + + +F R G+V + + DR+ +
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKK 75
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 242
L V NL+ TT +DLR VF GE+ + DR
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDR 111
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTR 251
+DLR FE+ G+V DI P D+ T+
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTK 148
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTR 251
+DLR FE+ G+V DI P D+ T+
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTK 148
>Z72502-5|CAA96590.1| 193|Caenorhabditis elegans Hypothetical
protein C08B6.8 protein.
Length = 193
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 202 DAERSVISTYPEIVTHEKVEVL 267
D+E + I+T P+IV H+ EVL
Sbjct: 41 DSELNTIATGPDIVIHQPKEVL 62
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ +L ++ L T E++R +F GE+ + RD+ T +S
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQS 82
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ L+Y + D+ VF + GEV +I + RD+ T +S
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKS 78
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical
protein F59A6.4 protein.
Length = 752
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 120 RIDGMVSLKVDNLTYRTTPE 179
R+ G+VS VDN+ Y TTP+
Sbjct: 683 RLKGLVSY-VDNMQYETTPD 701
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 309 GLLQHLGGQRILRKQNLYFLVCNDLWVCRYHRPLRIFQIRDGD 181
GL HL Q + +K+ + V L V HR +++ I DG+
Sbjct: 196 GLALHLANQELSKKEGSHGEVSQILKVLNVHR-FQVYFITDGE 237
>U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical
protein C18A11.6 protein.
Length = 188
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 231 VCRYHRPLRIFQIRDGDLQESSDKLNCPLLVKPCRQYAAAAFRNSF*LLVQIF 73
+C Y R +R+ ++R LQES + + + Y + F S L +QI+
Sbjct: 136 LCHYSRNVRLHRLRYLGLQESGYGILSGIQLAIATYYRISRFLTSNQLWIQIY 188
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 135 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V + + D RR+FE+ G V I RD+ T+ S
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,461,742
Number of Sequences: 27780
Number of extensions: 112369
Number of successful extensions: 360
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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