Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B11
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 52 9e-08
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 52 9e-08
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 45 1e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 3e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 43 5e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 41 2e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 39 9e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.014
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 34 0.024
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.024
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 34 0.024
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.043
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 33 0.043
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.043
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.13
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.13
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.13
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.17
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.23
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 30 0.30
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 30 0.30
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 30 0.30
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 0.30
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 0.30
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 0.30
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 0.69
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 0.92
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 0.92
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 0.92
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 0.92
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 0.92
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 28 1.6
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 1.6
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 1.6
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 2.1
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 2.1
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 2.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 2.1
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 27 2.1
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 2.8
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 27 2.8
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 27 3.7
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 26 4.9
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 26 4.9
At1g35620.1 68414.m04425 thioredoxin family protein similar to S... 26 4.9
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 25 8.6
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put... 25 8.6
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 25 8.6
At2g28620.1 68415.m03479 kinesin motor protein-related 25 8.6
At1g49610.1 68414.m05562 F-box family protein contains F-box dom... 25 8.6
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.0 bits (119), Expect = 9e-08
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 102 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +S
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDS 56
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.0 bits (119), Expect = 9e-08
Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 102 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +S
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDS 56
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
SL V NL + EDLRR FE+ G V DIY+PRD YT
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYT 74
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
SL V NL + EDLR+ FE+ G V DIY+PRD YT
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYT 73
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
SL V N+ PE+LR FER G V D+YIPRD Y+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYS 84
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +3
Query: 129 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 254
G L + NL P DLR FER G + DIY+PR+ YT E
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V NLT+RTT +DLRR FE+ G+V D + + Y S
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRS 52
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 126 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 254
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ T E
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 117 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 242
P+ + +L V L+ RTT E LR F + GEV D + DR
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 102 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 239
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 180 DLRRVFERCGEVGDIYIPRDRYTRE 254
D R FER GE+ D+Y+P+D +++
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQ 130
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 93 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 254
K S G P +DG + + NL + TT D+R++F C + + + +++ T E
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.043
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 245
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 139
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 33.1 bits (72), Expect = 0.043
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+L V NL + T D+ +F G+V + + +DR+TR+S
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQS 97
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.043
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 117 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 239
P G L V NL + +DLR+VFE G V + +PRD
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 245
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 245
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 245
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 239
L + NL ++ P D++ VF G V D++IP++
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKN 365
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDI 224
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 99 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 233
+Y PP ++ V NL T E+L++ F + GEV + IP
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
L V +L + T +++ +F + G V D+Y+ RD Y R+S A+D L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGL 271
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
L V +L + T +++ +F + G V D+Y+ RD Y R+S A+D L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGL 271
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTRES 257
++LR F +CGEV +++P DR T S
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGAS 523
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 129 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDI 224
G +L NL+Y+ D+ F+ GEV D+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDV 413
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 99 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKS 57
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 99 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKS 57
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 0.69
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 180 DLRRVFERCGEVGDIYIPRDR 242
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L + T EDL+R F + G+V D I DR + S
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L + T EDL+R F + G+V D I DR + S
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L + T EDL+R F + G+V D I DR + S
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L + T EDL+R F + G+V D I DR + S
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 0.92
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 99 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
SY R P + V L + T +++RR F++ GE+ + I D+ T +S
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKS 57
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
L V NL T ED+R +F GEV I D+ R S
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPS 133
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 183 LRRVFERCGEVGDIYIPRD 239
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 183 LRRVFERCGEVGDIYIPRD 239
L + F+ CGE+ +Y+P D
Sbjct: 133 LEKHFDSCGEIRHVYVPTD 151
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 233
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
EDLR + E GE+ ++ + +DR + +S ++A++ L
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 105 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 124
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 105 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 60
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 105 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTR 251
GR I+ L + NL Y ED++ +F GE+ + DR R
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 126
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V +L + EDL++VF GEV ++ I ++ T++S
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKS 254
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 99 SYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEV 215
S PP G L V L++RTT + LR FE+ G +
Sbjct: 64 SSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V + + T DL VF + GE+ D+ + RD+ T +S
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKS 76
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 132 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
+ + V L + T + +RR FE+ GE+ + + D+ T S
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRS 62
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
V L + + E L +F + G V ++Y+P+DR T
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVT 62
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 183 LRRVFERCGEVGDIYIPRD 239
L + F CG++ IY+PRD
Sbjct: 227 LEKHFASCGKITHIYVPRD 245
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 257
V L + T E LR+ FE+ GE+ + + D+ T S
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRS 64
>At1g35620.1 68414.m04425 thioredoxin family protein similar to
SP|Q43116 Protein disulfide isomerase precursor (PDI)
(EC 5.3.4.1) {Ricinus communis}; contains Pfam profile
PF00085: Thioredoxin
Length = 440
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 196 LKDAERSVISTYPEIVTHEKVEVL 267
LKD ER ++ T E THE +E L
Sbjct: 255 LKDDERKIVLTIVEDETHESLEKL 278
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 123 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
+D + V L TT + + F + GE+ D I +DR T
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKT 79
>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 898
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 196 LKDAERSVISTYPEIVTHEKVEVLLS*DSLTAE 294
L++ +R ++ +YPEI+ E+ + L ++L E
Sbjct: 774 LEEKKRKLLDSYPEIIWDEQSQECLEQETLLVE 806
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
L V +++ T + LR F GEV + RD+ T
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLT 43
>At2g28620.1 68415.m03479 kinesin motor protein-related
Length = 1076
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 177 EDLRRVFERCGEVGDIYIPRDRYTRE 254
E L++ E IYIP++RYT+E
Sbjct: 416 ERLKQEVYAAREKNGIYIPKERYTQE 441
>At1g49610.1 68414.m05562 F-box family protein contains F-box domain
Pfam:PF00646
Length = 354
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 184 SVAYLKDAERSV--ISTYPEIVTHEKVEVLLS*DSLTAEMLKKPWTHL 321
SV LK V IS+ P+++ E + ++ + ++ +L K W H+
Sbjct: 14 SVRVLKHCLEDVDSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHV 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,048,576
Number of Sequences: 28952
Number of extensions: 102961
Number of successful extensions: 380
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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