Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B10
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   2.0  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.7  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 346  YIFPSLLLQYISEVNFVKSFKINVSFKI-NYNDSYFTNKI*ILSNIVYF 203
            Y   ++L+Q  S+  F KS    +  K+ N  +S+ T+ I +LSN+ YF
Sbjct: 1017 YELKNILVQGYSQEEFRKSPPRGMQLKLGNLTNSHVTDTI-VLSNLGYF 1064


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 82  LECANLLCTSMYVSFIIFLCY*FNDFCLNNILFNFRYIIMKNILYYLEF 228
           L C N  C S+    I F    F++    N + +F  +++ N++  L F
Sbjct: 586 LRCKNAYCDSIQRKGIKFPANYFDNVYTPNSISSFSEVLLPNLISTLNF 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,607
Number of Sequences: 5004
Number of extensions: 17843
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)