Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B10
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.    26   9.5  

>U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical
           protein EGAP9.3 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = +3

Query: 339 KIYCKK----KERYLLFPMIFLTF 398
           K+YC K    K++YLLFPM  + F
Sbjct: 46  KVYCDKNEIDKQKYLLFPMTAIVF 69


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 VSFIIFLCY*FNDFCLNNILFNFRYIIMKN 207
           V FI FLC      C N ++ NF +I MKN
Sbjct: 12  VVFIGFLC--LVSVCSNYVVMNFTFICMKN 39


>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 74  FYFLLLILKCLVFNLL 27
           FY+L+  LKCLVF+L+
Sbjct: 128 FYYLVQDLKCLVFSLI 143


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 74  FYFLLLILKCLVFNLL 27
           FY+L+  LKCLVF+L+
Sbjct: 123 FYYLVQDLKCLVFSLI 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,279
Number of Sequences: 27780
Number of extensions: 95833
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)