Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B10
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30390.1 68416.m03836 amino acid transporter family protein l...    27   5.1  
At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put...    27   6.7  
At1g02140.1 68414.m00140 mago nashi family protein similar to Ma...    26   8.9  

>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 91  ANLLCTSMYVSFIIFLCY*FNDFCLNNILFNF 186
           A +LC+S+Y+   IF    F D  L+++L NF
Sbjct: 281 ALMLCSSVYIMTSIFGFLLFGDDTLDDVLANF 312


>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 886

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 346 YIFPSLLLQYISEVNFVKSFKINVSFKINYNDSYFTNK 233
           YI P   L YIS+VNFV+  K   + K N +D  FT++
Sbjct: 43  YIEPLTNLTYISDVNFVRGGKTG-NIK-NNSDIDFTSR 78


>At1g02140.1 68414.m00140 mago nashi family protein similar to Mago
           Nashi, Genbank Accession Number U03559; contains Pfam
           PF02792: Mago nashi protein domain
          Length = 150

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 74  FYFLLLILKCLVFNLL 27
           FY+L+  LKCLVF+L+
Sbjct: 126 FYYLVQDLKCLVFSLI 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,791,614
Number of Sequences: 28952
Number of extensions: 73067
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)