Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B08
         (381 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.26 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   5.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   5.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   9.6  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 253 PMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSST 110
           P  VI + T  PS   +NR   +G    A A S V   +P+  T+S+T
Sbjct: 124 PSGVISTNTSPPSPILSNR---FGENEEADAASNVISSTPLPPTTSTT 168


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 72  KAELACVYSALILVDD--------DVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 215
           K EL C+ + ++   D        +V +  EKI  +L+       P  PG FAK L
Sbjct: 310 KTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLL 365


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 187 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE 95
           YG T T ++ S  ++ +PV    +S +   E
Sbjct: 263 YGKTFTLSSASNAKLGAPVKGAGNSGKYTGE 293


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 114 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 245
           + D+A+TG+   +I +   +    Y+  L    L  I    L T
Sbjct: 373 NSDIAITGKNFFSITRGLILSFVDYFVFLLCSILVNIAFIKLAT 416


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 62  FKCYTCKSPKG 30
           +KC TCK   G
Sbjct: 871 YKCVTCKCENG 881


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 53  YTCKSPKG 30
           Y+CK PKG
Sbjct: 206 YSCKCPKG 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,277
Number of Sequences: 336
Number of extensions: 1207
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7908675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)