Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B08
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    83   5e-17
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   1.2  
07_03_0260 + 15928932-15929255,15930174-15930347                       27   5.0  
05_03_0090 - 8330283-8330831                                           27   5.0  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    26   8.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 83.4 bits (197), Expect = 5e-17
 Identities = 42/104 (40%), Positives = 54/104 (51%)
 Frame = +3

Query: 69  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 248
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 249 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMG 380
           +GSG                                   DDDMG
Sbjct: 62  VGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMG 105


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 42  LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 215
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +     E  W   F   L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 102 GRSKHKLIQLLMPF*MLYVQVAKR 31
           GR+ HKL+Q+ +PF +L V  A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 121 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 222
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
            19220464-19221117,19221233-19221277,19223300-19223845,
            19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 193  GQYGSTSTAAAFSMVEIFSPVTATSSS 113
            G +G T+ AAA +  ++F+P T   +S
Sbjct: 942  GDHGHTADAAAAAAADVFTPATMARAS 968


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,093,895
Number of Sequences: 37544
Number of extensions: 144830
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)