Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B08
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   109   5e-25
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   106   6e-24
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    27   6.0  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    26   7.9  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    26   7.9  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  109 bits (263), Expect = 5e-25
 Identities = 53/106 (50%), Positives = 65/106 (61%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 243 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMG 380
           T++ SG                                   DDDMG
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMG 106


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  106 bits (254), Expect = 6e-24
 Identities = 52/106 (49%), Positives = 64/106 (60%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 243 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMG 380
           T++ SG                                   DDDMG
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMG 106


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 87  CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 257
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 187 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 71
           +GST+T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 60  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 188
           KM  K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = -3

Query: 259 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 89
           P+P  V+   +  PS   ANR  +   TS A    MV   ++ S +  T+++T I    T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532

Query: 88  QANSAFDAILNVIRASRQKALAQGEQALV 2
            AN     I  + R +R +++    Q  +
Sbjct: 533 TAN-----IQGIPRGARDRSVTSPPQPTI 556


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = -3

Query: 259 PDPMLVIKSRTLMPSKAFANRPGQYGSTSTAAAFSMV---EIFSPVTATSSSTRIRAE*T 89
           P+P  V+   +  PS   ANR  +   TS A    MV   ++ S +  T+++T I    T
Sbjct: 473 PNPTFVVCGSSTKPSPNNANRVRRSTITSPADTQDMVAADQMLSNLDPTTTTTTIPKSAT 532

Query: 88  QANSAFDAILNVIRASRQKALAQGEQALV 2
            AN     I  + R +R +++    Q  +
Sbjct: 533 TAN-----IQGIPRGARDRSVTSPPQPTI 556


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 51  ITFKMA-SKAELACVYSALILVDDDVAVTGEKISTILK 161
           IT  M+ S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 259 ITLDMSISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 217 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 119
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 217 SKAFANRPGQYGSTSTAAAFSMVEIFSPVTATS 119
           S+    + G+ GS  +AAA S VEI  P  +TS
Sbjct: 50  SRKKGGKGGKKGSKKSAAAASKVEIPDPYNSTS 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,401,226
Number of Sequences: 27780
Number of extensions: 107518
Number of successful extensions: 262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)