Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B08
         (381 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    81   2e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    81   2e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    81   3e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    81   3e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       80   4e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     79   7e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.003
At1g07380.1 68414.m00787 ceramidase family protein contains simi...    28   1.8  
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor...    28   2.4  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   3.2  
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ...    27   4.2  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    27   4.2  
At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing ...    26   7.4  
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    26   9.7  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 35/66 (53%), Positives = 50/66 (75%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 243 TNIGSG 260
            N+G+G
Sbjct: 61  MNVGAG 66


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 35/66 (53%), Positives = 50/66 (75%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 243 TNIGSG 260
            N+G+G
Sbjct: 61  MNVGAG 66


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 243 TNIGSG 260
            N+G+G
Sbjct: 61  MNVGAG 66


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 243 TNIGSG 260
            N+G+G
Sbjct: 61  MNVGAG 66


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 35/66 (53%), Positives = 49/66 (74%)
 Frame = +3

Query: 63  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 242
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 243 TNIGSG 260
            N+G+G
Sbjct: 61  MNVGAG 66


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 79.4 bits (187), Expect = 7e-16
 Identities = 36/64 (56%), Positives = 46/64 (71%)
 Frame = +3

Query: 69  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 248
           S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI N
Sbjct: 2   STSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMN 61

Query: 249 IGSG 260
           +G+G
Sbjct: 62  VGAG 65


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +3

Query: 78  ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 200
           ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 5   ELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At1g07380.1 68414.m00787 ceramidase family protein contains
           similarity to mitochondrial ceramidase [Homo sapiens]
           gi|9246993|gb|AAF86240
          Length = 779

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 33  FWRLARITFKMASKAELACVYSALILVD 116
           FWRL R   K   K ++ C Y   IL+D
Sbjct: 479 FWRLVRNVLKTPDKKQIDCHYPKPILLD 506


>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative similar to SP|P161127 from Arabidopsis
           thaliana, SP|P93162 from Glycine max, SP|O22436 from
           Nicotiana tabacum; non-consensus AA donor splice site at
           exon 1, TG acceptor splice site at exon 2
          Length = 418

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 60  KMASKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 224
           K+    EL+ + + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 214 KAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTR 107
           + ++N P  + S  TAA   M +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
           protein
          Length = 313

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 39  RLARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 185
           +LA +TFK    AE A + S   +VD  V V+      +   A   +EP
Sbjct: 43  KLAYVTFKDLQGAETAVLLSGATIVDSSVIVSMAPDYQLSPEALASLEP 91


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 238 KSRTLMPSKAFANRPGQYGSTSTAAAFSMVEIFSPVTATSSSTRIRAE 95
           K+R +   K    RP    STS+++A +  + F  +  TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218


>At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing
           protein similar to unknown protein (pir||C71447)
          Length = 295

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 39  RLARITFKMASKAELACVYSALILVDDDVAVT 134
           +LA +TFK    AE A + +   +VD  V VT
Sbjct: 43  KLAYVTFKDLQGAETAVLLTGSTIVDSSVTVT 74


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 195 GLFAKALEGINVRDLIT 245
           GL   AL+GINVR+++T
Sbjct: 316 GLLPAALQGINVREMLT 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,187,009
Number of Sequences: 28952
Number of extensions: 105467
Number of successful extensions: 231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)