Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B07
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 28 0.58
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 27 1.8
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 2.3
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 2.3
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 4.1
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 25 4.1
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 5.4
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 7.1
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.1
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 24 9.4
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 24 9.4
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 24 9.4
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -3
Query: 158 VSHSDAQVPNISSAMLSMYLIRHKMYASLNNLASASVFTAP----FTS*ILRNVPR 3
++H+ + S + ++RH A+ NN++ S F AP F S L+++P+
Sbjct: 14 LNHNGLSYQRVFSCLTQFPMLRHSSTAAKNNVSMISKFQAPEDKFFPSFSLKSMPK 69
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 95 RHKMYASLNNLASASVFTAPFTS 27
+H + +LN+ SAS++++P+TS
Sbjct: 213 KHARFQTLNSSDSASIYSSPYTS 235
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 1.8
Identities = 18/84 (21%), Positives = 39/84 (46%)
Frame = +1
Query: 187 CYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDD 366
C++ G + + G S PE++R+A +L +L+G + + +I ENS D
Sbjct: 383 CFLRSGLFQNQQPLTGPS--PETIRIAVNLQELIG-KYLGDKDIFQIENFINPIEENSAD 439
Query: 367 KLPKLTSRADAIATTGEEYQIEDD 438
+ ++ A E++ +++
Sbjct: 440 TNDDIVNQVAAQFLDEREFETDEE 463
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 2.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 395 SALEVNFGNLSSLFSACSSLIWAIFSRTCSANV--LWPT 285
SA NFG L S S WA + R+ S + LWPT
Sbjct: 218 SASTSNFGTLKSTSKKPSDKSWAEYFRSFSTLLPYLWPT 256
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 319 EKIAQIKLEQAENSDDKLPKLTSRADAIATTG 414
EKI + L+ ENSDD P + A+ I T G
Sbjct: 519 EKIIEAPLDTKENSDDDKPS-PAAAEDIGTNG 549
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 256 LRLAADLAKLVGHNTFAE-HVLEKIA 330
LR A++AKLVG ++FA+ +++K+A
Sbjct: 305 LRSKAEVAKLVGKSSFADLQLIDKMA 330
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 4.1
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 13 FLSIHDVKGAVKTLAEARLFKEAYILCRIRYMDSIAEEMLGTWASECDTIGNFVVSAACY 192
FLSI D + A++T+ + + + +RY + EE + T + + + A
Sbjct: 342 FLSISDEQRALQTIRRGMRYCPSNFVLHVRYAEH--EEANNRTSEIRSTYESLIAALARE 399
Query: 193 IAQ-GNISSASIILGKSQNPESLRLAADLAK 282
I+Q + +S+S NP+ +L L K
Sbjct: 400 ISQLDSKASSSSESSTDGNPQEKKLPEHLVK 430
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 4.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 162 WKFCCICCLLHSP 200
W FCC+C +L P
Sbjct: 16 WFFCCVCTILTMP 28
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 307 EHVLEKIAQIKLEQAENSDDKLPKLTSRADAIATTGEEYQIEDDYN 444
E +E + + KLEQ+ S + L ++ D ATT E ED N
Sbjct: 964 ELTIESVLE-KLEQSGQSLEPLEQIQCFVDVKATTSAEITEEDKKN 1008
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 325 FSRERALRMYCGRLV*PGLRLNVEIPDSEICQ 230
FS ++ L YCG L L L + +P+ C+
Sbjct: 5 FSSKKQLPAYCGPLPVGSLVLELSVPEEFRCE 36
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 181 AACYIAQGNISSASIILGKSQNPESLRLAADLAKLV 288
A Y+A + +AS I GK PE + A L V
Sbjct: 471 ALAYLASPAVVAASAIAGKIVAPEGFKNAVSLVSAV 506
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 143 AQVPNISSAMLSMYLIRHKMYASLNNLASASVFTAP 36
A N ++A S +++H+ A L + + FTAP
Sbjct: 355 AAAANAAAAFASASIVKHQETARRQELPTVNRFTAP 390
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 265 AADLAKLVGHNTFAEHVLEKIAQIKLEQAENSD-DKL 372
A DL K GH + VLEK+ L +S DKL
Sbjct: 873 AIDLVKTYGHLHYINFVLEKLLSSSLLTYNSSQRDKL 909
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 9.4
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +1
Query: 106 MDSIAEEMLGTWASECDTI 162
+D+ E ++GTW+S+ +T+
Sbjct: 23 IDNYDENLVGTWSSKSETV 41
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 235 KSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAENSDDKLPKLTSRADAIATT 411
K+ E+ L+ L VG N F HV ++ QI++ E S + T+ I+ +
Sbjct: 181 KNIRQEASNLSITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNS 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,433
Number of Sequences: 5004
Number of extensions: 34190
Number of successful extensions: 122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -