Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B07
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1127 + 8930593-8932681,8932812-8933401 29 1.7
03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281 29 2.3
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 28 3.0
06_03_1316 + 29273345-29273741,29273847-29273992,29274104-292741... 28 3.0
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 28 3.0
07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179... 28 4.0
11_06_0686 + 26280772-26281611 27 5.3
10_08_0520 - 18495118-18498237 27 5.3
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 27 7.0
12_02_0359 + 17956816-17956915,17957255-17957347,17957583-179578... 27 7.0
06_03_0050 + 15980215-15981519 27 9.2
03_02_0361 - 7800879-7801484,7801614-7802513 27 9.2
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 115 IAEEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGH 294
+A++++ EC T V AC +A + + A I G + P S++L AKL
Sbjct: 323 VAQQLIQRGCEECPT-NEDVWLKACRLASPDEAKAVIARGVKEIPNSVKLWLQAAKLETS 381
Query: 295 NTFAEHVLEK 324
+ VL K
Sbjct: 382 DLNKSRVLRK 391
>03_03_0066 + 14214512-14215146,14215848-14216139,14216264-14216281
Length = 314
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 404 AMASALEVNFGNLSSLFSACSSLIWAIFSRTCSANVLWPTSLARSAAKRRDSGF*DLPSI 225
A+ASA+++ + N ++ A W + + S ++L +LA AA RRD L +
Sbjct: 111 AVASAVDITY-NYQNMVFANYGARWKLMRKLASVHLLGARALADWAAVRRDEARRLLRGV 169
Query: 224 IEA 216
EA
Sbjct: 170 AEA 172
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 181 AACYIAQGNISSASIILGKSQNPESLRLA 267
AAC ++GN SSASIIL SQ + RL+
Sbjct: 664 AACLKSEGN-SSASIILTSSQKKQRSRLS 691
>06_03_1316 +
29273345-29273741,29273847-29273992,29274104-29274176,
29274319-29274428
Length = 241
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 175 VSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGHNTFAEHVLEKIAQIKLEQAE 354
V+AA +Q + ++++G+ S LAA A L G VLE I+L +
Sbjct: 52 VAAAAVSSQCHQERRAVVVGRRSGMASCLLAAVAASLSGAGEARAAVLEADDDIELLERV 111
Query: 355 NSDDKLPKLTSRADAIATTGEE 420
D K K + I+++G E
Sbjct: 112 KEDRK--KRLQKQGVISSSGTE 131
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 97 IRYMDSIAEEMLGTWASECDTIG-NFVVSAACYIAQGNISSASIILGKS 240
IR++D ++ L W S+ D I + +VSA C A + S + S
Sbjct: 1605 IRFIDISQDQKLHLWKSDSDEISFSSLVSAICSCASDKLKKDSTVASSS 1653
>07_03_0200 -
15016084-15016342,15016814-15016869,15016963-15017960,
15018707-15018768,15019242-15019274,15019697-15019881,
15020033-15020133,15020783-15020795,15021216-15021319,
15021593-15021693,15022773-15022849,15022965-15023021,
15023158-15023268,15023803-15023859
Length = 737
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 253 SLRLAADLAKLVGHNTFAEHVLEKIAQIK 339
+L+ AA LA+ +GH+ +AE + K A+ K
Sbjct: 523 ALQTAAALARTLGHHDYAERCMLKFAKAK 551
>11_06_0686 + 26280772-26281611
Length = 279
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 235 CQVLLRRSIYSLGLCNKQQIQQNFQSCRIRMPRCLTSL 122
CQ RR+ YSL + Q + F + RCL L
Sbjct: 91 CQASSRRTYYSLLVAGGWQYAEQFDEVNAEIDRCLRDL 128
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 115 IAEEMLGTWASECDTIGNFVVSAACYIAQGNISSASIILGKSQNPESLRLAADLAKLVGH 294
+A +++ EC T + V A C +A + + A I G P S++L AKL
Sbjct: 418 VARQLIQRGCEECPTNEDVWVEA-CRLASPDEAKAVIARGVKAIPNSVKLWLQAAKLETS 476
Query: 295 NTFAEHVLEK 324
+ VL K
Sbjct: 477 DLNKSRVLRK 486
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 152 HSDAQVPNISSAMLSMYLIRHKMYASLNNL 63
H D V +SSA+ ++ +RHK+ A N L
Sbjct: 189 HKDGNVVGVSSAVHNLESLRHKIAARENEL 218
>12_02_0359 +
17956816-17956915,17957255-17957347,17957583-17957813,
17958433-17958736,17959505-17960156
Length = 459
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 205 NISSASIILGKSQNPESLRLAAD 273
N SSAS GKS++P SL L AD
Sbjct: 384 NTSSASDDKGKSRHPPSLNLLAD 406
>06_03_0050 + 15980215-15981519
Length = 434
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 158 VSHSD--AQVPNISSAMLSMYLIRHKMYASLNNLASASVFTAPFTS 27
VSH+ +VP +A+ S+Y+ ++MY + + SVF T+
Sbjct: 317 VSHNGITGEVPEELAAVESLYVNNNRMYGEVPEAVARSVFAGRMTT 362
>03_02_0361 - 7800879-7801484,7801614-7802513
Length = 501
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 344 SSLIWAIFSRTCSANVLWPTSLARSAAKRRD 252
SS +W R C+A + P SL RRD
Sbjct: 120 SSALWRALRRVCAAELFAPRSLDAHQRLRRD 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,694
Number of Sequences: 37544
Number of extensions: 224728
Number of successful extensions: 601
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -